Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.66■■□□□ 1.06
PKNOX1P55347 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.66■■□□□ 1.06
PKNOX1P55347 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
PKNOX1P55347 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
PKNOX1P55347 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PKNOX1P55347 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
PKNOX1P55347 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PKNOX1P55347 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PKNOX1P55347 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PKNOX1P55347 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
PKNOX1P55347 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.65■■□□□ 1.06
PKNOX1P55347 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PKNOX1P55347 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
PKNOX1P55347 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PKNOX1P55347 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PKNOX1P55347 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.65■■□□□ 1.06
PKNOX1P55347 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
PKNOX1P55347 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PKNOX1P55347 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PKNOX1P55347 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PKNOX1P55347 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
PKNOX1P55347 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
PKNOX1P55347 AC021242.3-201ENST00000607598 1377 ntBASIC21.64■■□□□ 1.06
PKNOX1P55347 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PKNOX1P55347 AC005703.6-201ENST00000623265 1329 ntBASIC21.64■■□□□ 1.05
PKNOX1P55347 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PKNOX1P55347 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.64■■□□□ 1.05
PKNOX1P55347 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
PKNOX1P55347 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PKNOX1P55347 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PKNOX1P55347 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
PKNOX1P55347 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PKNOX1P55347 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
PKNOX1P55347 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.64■■□□□ 1.05
PKNOX1P55347 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PKNOX1P55347 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.63■■□□□ 1.05
PKNOX1P55347 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
PKNOX1P55347 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.63■■□□□ 1.05
PKNOX1P55347 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
PKNOX1P55347 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
PKNOX1P55347 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PKNOX1P55347 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.63■■□□□ 1.05
PKNOX1P55347 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
PKNOX1P55347 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PKNOX1P55347 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PKNOX1P55347 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PKNOX1P55347 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PKNOX1P55347 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PKNOX1P55347 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.62■■□□□ 1.05
PKNOX1P55347 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PKNOX1P55347 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.62■■□□□ 1.05
PKNOX1P55347 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PKNOX1P55347 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PKNOX1P55347 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PKNOX1P55347 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.62■■□□□ 1.05
PKNOX1P55347 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.62■■□□□ 1.05
PKNOX1P55347 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PKNOX1P55347 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PKNOX1P55347 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PKNOX1P55347 AL024507.2-201ENST00000606070 2574 ntBASIC21.62■■□□□ 1.05
PKNOX1P55347 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PKNOX1P55347 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.62■■□□□ 1.05
PKNOX1P55347 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PKNOX1P55347 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.61■■□□□ 1.05
PKNOX1P55347 AL137060.1-201ENST00000618151 2648 ntBASIC21.61■■□□□ 1.05
PKNOX1P55347 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PKNOX1P55347 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.61■■□□□ 1.05
PKNOX1P55347 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.61■■□□□ 1.05
PKNOX1P55347 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PKNOX1P55347 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PKNOX1P55347 BX664725.1-201ENST00000438252 379 ntBASIC21.61■■□□□ 1.05
PKNOX1P55347 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.61■■□□□ 1.05
PKNOX1P55347 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PKNOX1P55347 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PKNOX1P55347 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PKNOX1P55347 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PKNOX1P55347 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PKNOX1P55347 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PKNOX1P55347 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PKNOX1P55347 AC242852.2-201ENST00000615738 1807 ntBASIC21.6■■□□□ 1.05
PKNOX1P55347 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.6■■□□□ 1.05
PKNOX1P55347 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.6■■□□□ 1.05
PKNOX1P55347 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
PKNOX1P55347 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PKNOX1P55347 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
PKNOX1P55347 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PKNOX1P55347 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
PKNOX1P55347 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PKNOX1P55347 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PKNOX1P55347 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PKNOX1P55347 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.59■■□□□ 1.05
PKNOX1P55347 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PKNOX1P55347 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.59■■□□□ 1.05
PKNOX1P55347 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
PKNOX1P55347 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PKNOX1P55347 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.58■■□□□ 1.05
PKNOX1P55347 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.58■■□□□ 1.05
PKNOX1P55347 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PKNOX1P55347 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PKNOX1P55347 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms