Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.14■□□□□ 0.81
SNRNP40Q96DI7 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.14■□□□□ 0.81
SNRNP40Q96DI7 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SNRNP40Q96DI7 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SNRNP40Q96DI7 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SNRNP40Q96DI7 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SNRNP40Q96DI7 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.14■□□□□ 0.81
SNRNP40Q96DI7 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SNRNP40Q96DI7 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.14■□□□□ 0.81
SNRNP40Q96DI7 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.81
SNRNP40Q96DI7 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SNRNP40Q96DI7 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SNRNP40Q96DI7 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 AC006015.1-201ENST00000429970 570 ntBASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.13■□□□□ 0.81
SNRNP40Q96DI7 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 AC016769.1-201ENST00000409132 1010 ntBASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SNRNP40Q96DI7 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SNRNP40Q96DI7 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
SNRNP40Q96DI7 AC135731.1-201ENST00000569415 2548 ntBASIC20.11■□□□□ 0.81
SNRNP40Q96DI7 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.11■□□□□ 0.81
SNRNP40Q96DI7 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SNRNP40Q96DI7 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
SNRNP40Q96DI7 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SNRNP40Q96DI7 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.11■□□□□ 0.81
SNRNP40Q96DI7 AC137761.2-201ENST00000561729 223 ntBASIC20.11■□□□□ 0.81
SNRNP40Q96DI7 AC145350.3-201ENST00000569033 163 ntBASIC20.11■□□□□ 0.81
SNRNP40Q96DI7 KRT18P61-201ENST00000585825 1298 ntBASIC20.11■□□□□ 0.81
SNRNP40Q96DI7 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.11■□□□□ 0.81
SNRNP40Q96DI7 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
SNRNP40Q96DI7 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.1■□□□□ 0.81
SNRNP40Q96DI7 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.1■□□□□ 0.81
SNRNP40Q96DI7 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.1■□□□□ 0.81
SNRNP40Q96DI7 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.1■□□□□ 0.81
SNRNP40Q96DI7 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.1■□□□□ 0.81
SNRNP40Q96DI7 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNRNP40Q96DI7 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNRNP40Q96DI7 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SNRNP40Q96DI7 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SNRNP40Q96DI7 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SNRNP40Q96DI7 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SNRNP40Q96DI7 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.09■□□□□ 0.81
SNRNP40Q96DI7 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SNRNP40Q96DI7 CDCA4P2-201ENST00000441182 718 ntBASIC20.09■□□□□ 0.81
SNRNP40Q96DI7 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.09■□□□□ 0.81
SNRNP40Q96DI7 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SNRNP40Q96DI7 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.09■□□□□ 0.81
SNRNP40Q96DI7 RAP2CP1-201ENST00000605103 478 ntBASIC20.09■□□□□ 0.81
SNRNP40Q96DI7 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
SNRNP40Q96DI7 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SNRNP40Q96DI7 LINC01529-204ENST00000636474 1715 ntBASIC20.08■□□□□ 0.81
SNRNP40Q96DI7 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SNRNP40Q96DI7 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.08■□□□□ 0.81
SNRNP40Q96DI7 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SNRNP40Q96DI7 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.08■□□□□ 0.81
SNRNP40Q96DI7 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.08■□□□□ 0.81
SNRNP40Q96DI7 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.08■□□□□ 0.81
SNRNP40Q96DI7 AC073111.5-205ENST00000641717 521 ntBASIC20.08■□□□□ 0.81
SNRNP40Q96DI7 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SNRNP40Q96DI7 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SNRNP40Q96DI7 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.08■□□□□ 0.8
SNRNP40Q96DI7 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNRNP40Q96DI7 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SNRNP40Q96DI7 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNRNP40Q96DI7 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNRNP40Q96DI7 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.07■□□□□ 0.8
SNRNP40Q96DI7 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.07■□□□□ 0.8
SNRNP40Q96DI7 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SNRNP40Q96DI7 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
SNRNP40Q96DI7 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SNRNP40Q96DI7 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
SNRNP40Q96DI7 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms