Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MMP28Q9H239 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
MMP28Q9H239 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MMP28Q9H239 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MMP28Q9H239 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MMP28Q9H239 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
MMP28Q9H239 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
MMP28Q9H239 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MMP28Q9H239 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MMP28Q9H239 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC19.57■□□□□ 0.72
MMP28Q9H239 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MMP28Q9H239 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
MMP28Q9H239 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MMP28Q9H239 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MMP28Q9H239 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MMP28Q9H239 AL033527.3-201ENST00000566366 1196 ntBASIC19.56■□□□□ 0.72
MMP28Q9H239 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.56■□□□□ 0.72
MMP28Q9H239 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MMP28Q9H239 FBXW4P1-201ENST00000426721 2239 ntBASIC19.56■□□□□ 0.72
MMP28Q9H239 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MMP28Q9H239 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
MMP28Q9H239 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.56■□□□□ 0.72
MMP28Q9H239 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MMP28Q9H239 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MMP28Q9H239 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.55■□□□□ 0.72
MMP28Q9H239 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MMP28Q9H239 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.55■□□□□ 0.72
MMP28Q9H239 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MMP28Q9H239 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
MMP28Q9H239 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MMP28Q9H239 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MMP28Q9H239 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MMP28Q9H239 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
MMP28Q9H239 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
MMP28Q9H239 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MMP28Q9H239 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
MMP28Q9H239 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
MMP28Q9H239 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.55■□□□□ 0.72
MMP28Q9H239 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
MMP28Q9H239 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
MMP28Q9H239 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MMP28Q9H239 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
MMP28Q9H239 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
MMP28Q9H239 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MMP28Q9H239 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MMP28Q9H239 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.54■□□□□ 0.72
MMP28Q9H239 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.54■□□□□ 0.72
MMP28Q9H239 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MMP28Q9H239 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
MMP28Q9H239 AL592293.1-201ENST00000502889 1188 ntBASIC19.54■□□□□ 0.72
MMP28Q9H239 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
MMP28Q9H239 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.54■□□□□ 0.72
MMP28Q9H239 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.54■□□□□ 0.72
MMP28Q9H239 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MMP28Q9H239 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
MMP28Q9H239 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MMP28Q9H239 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.54■□□□□ 0.72
MMP28Q9H239 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.54■□□□□ 0.72
MMP28Q9H239 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MMP28Q9H239 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.54■□□□□ 0.72
MMP28Q9H239 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MMP28Q9H239 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MMP28Q9H239 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MMP28Q9H239 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.53■□□□□ 0.72
MMP28Q9H239 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
MMP28Q9H239 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
MMP28Q9H239 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
MMP28Q9H239 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC19.53■□□□□ 0.72
MMP28Q9H239 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
MMP28Q9H239 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.53■□□□□ 0.72
MMP28Q9H239 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MMP28Q9H239 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
MMP28Q9H239 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MMP28Q9H239 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MMP28Q9H239 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.53■□□□□ 0.72
MMP28Q9H239 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
MMP28Q9H239 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.52■□□□□ 0.72
MMP28Q9H239 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MMP28Q9H239 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.52■□□□□ 0.72
MMP28Q9H239 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MMP28Q9H239 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.52■□□□□ 0.72
MMP28Q9H239 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
MMP28Q9H239 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.52■□□□□ 0.72
MMP28Q9H239 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC19.52■□□□□ 0.72
MMP28Q9H239 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
MMP28Q9H239 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.71
MMP28Q9H239 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.52■□□□□ 0.71
MMP28Q9H239 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.52■□□□□ 0.71
MMP28Q9H239 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.52■□□□□ 0.71
MMP28Q9H239 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MMP28Q9H239 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MMP28Q9H239 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
MMP28Q9H239 KRT18P10-201ENST00000388836 1287 ntBASIC19.51■□□□□ 0.71
MMP28Q9H239 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MMP28Q9H239 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.51■□□□□ 0.71
MMP28Q9H239 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
MMP28Q9H239 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MMP28Q9H239 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MMP28Q9H239 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MMP28Q9H239 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms