Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.22■□□□□ 0.99
UBE3DQ7Z6J8 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.22■□□□□ 0.99
UBE3DQ7Z6J8 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBE3DQ7Z6J8 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.22■□□□□ 0.99
UBE3DQ7Z6J8 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
UBE3DQ7Z6J8 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
UBE3DQ7Z6J8 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.21■□□□□ 0.99
UBE3DQ7Z6J8 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBE3DQ7Z6J8 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
UBE3DQ7Z6J8 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBE3DQ7Z6J8 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBE3DQ7Z6J8 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
UBE3DQ7Z6J8 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.21■□□□□ 0.99
UBE3DQ7Z6J8 MIR4466-201ENST00000606121 54 ntBASIC21.21■□□□□ 0.99
UBE3DQ7Z6J8 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
UBE3DQ7Z6J8 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.21■□□□□ 0.99
UBE3DQ7Z6J8 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.21■□□□□ 0.99
UBE3DQ7Z6J8 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBE3DQ7Z6J8 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBE3DQ7Z6J8 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.2■□□□□ 0.98
UBE3DQ7Z6J8 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
UBE3DQ7Z6J8 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.2■□□□□ 0.98
UBE3DQ7Z6J8 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBE3DQ7Z6J8 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBE3DQ7Z6J8 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBE3DQ7Z6J8 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBE3DQ7Z6J8 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
UBE3DQ7Z6J8 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
UBE3DQ7Z6J8 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.19■□□□□ 0.98
UBE3DQ7Z6J8 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.19■□□□□ 0.98
UBE3DQ7Z6J8 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.19■□□□□ 0.98
UBE3DQ7Z6J8 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE3DQ7Z6J8 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.19■□□□□ 0.98
UBE3DQ7Z6J8 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
UBE3DQ7Z6J8 AC131281.2-201ENST00000520478 145 ntBASIC21.19■□□□□ 0.98
UBE3DQ7Z6J8 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.19■□□□□ 0.98
UBE3DQ7Z6J8 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE3DQ7Z6J8 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
UBE3DQ7Z6J8 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.18■□□□□ 0.98
UBE3DQ7Z6J8 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
UBE3DQ7Z6J8 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.18■□□□□ 0.98
UBE3DQ7Z6J8 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3DQ7Z6J8 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.18■□□□□ 0.98
UBE3DQ7Z6J8 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.18■□□□□ 0.98
UBE3DQ7Z6J8 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.18■□□□□ 0.98
UBE3DQ7Z6J8 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.18■□□□□ 0.98
UBE3DQ7Z6J8 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3DQ7Z6J8 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.18■□□□□ 0.98
UBE3DQ7Z6J8 AC133561.1-201ENST00000568600 2415 ntBASIC21.18■□□□□ 0.98
UBE3DQ7Z6J8 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
UBE3DQ7Z6J8 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3DQ7Z6J8 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.18■□□□□ 0.98
UBE3DQ7Z6J8 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3DQ7Z6J8 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 AC006455.2-201ENST00000429931 906 ntBASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 AC131212.1-201ENST00000613771 668 ntBASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
UBE3DQ7Z6J8 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.15■□□□□ 0.98
UBE3DQ7Z6J8 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
UBE3DQ7Z6J8 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
UBE3DQ7Z6J8 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
UBE3DQ7Z6J8 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
UBE3DQ7Z6J8 AC099791.2-201ENST00000605725 427 ntBASIC21.15■□□□□ 0.98
UBE3DQ7Z6J8 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.15■□□□□ 0.98
UBE3DQ7Z6J8 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
UBE3DQ7Z6J8 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
UBE3DQ7Z6J8 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
UBE3DQ7Z6J8 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
UBE3DQ7Z6J8 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms