Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.91■■□□□ 1.1
PKNOX1P55347 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.9■■□□□ 1.1
PKNOX1P55347 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.9■■□□□ 1.1
PKNOX1P55347 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
PKNOX1P55347 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PKNOX1P55347 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.9■■□□□ 1.1
PKNOX1P55347 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
PKNOX1P55347 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
PKNOX1P55347 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.9■■□□□ 1.1
PKNOX1P55347 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PKNOX1P55347 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
PKNOX1P55347 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PKNOX1P55347 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.9■■□□□ 1.1
PKNOX1P55347 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PKNOX1P55347 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PKNOX1P55347 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PKNOX1P55347 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
PKNOX1P55347 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.89■■□□□ 1.1
PKNOX1P55347 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PKNOX1P55347 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
PKNOX1P55347 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.89■■□□□ 1.09
PKNOX1P55347 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
PKNOX1P55347 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.89■■□□□ 1.09
PKNOX1P55347 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PKNOX1P55347 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PKNOX1P55347 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.09
PKNOX1P55347 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.89■■□□□ 1.09
PKNOX1P55347 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
PKNOX1P55347 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
PKNOX1P55347 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PKNOX1P55347 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.88■■□□□ 1.09
PKNOX1P55347 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.88■■□□□ 1.09
PKNOX1P55347 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.88■■□□□ 1.09
PKNOX1P55347 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PKNOX1P55347 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PKNOX1P55347 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PKNOX1P55347 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PKNOX1P55347 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
PKNOX1P55347 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.87■■□□□ 1.09
PKNOX1P55347 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PKNOX1P55347 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.87■■□□□ 1.09
PKNOX1P55347 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.87■■□□□ 1.09
PKNOX1P55347 LINC00526-201ENST00000581067 1875 ntBASIC21.87■■□□□ 1.09
PKNOX1P55347 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PKNOX1P55347 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.87■■□□□ 1.09
PKNOX1P55347 GUSBP5-202ENST00000510805 1989 ntBASIC21.87■■□□□ 1.09
PKNOX1P55347 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PKNOX1P55347 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
PKNOX1P55347 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PKNOX1P55347 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.86■■□□□ 1.09
PKNOX1P55347 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PKNOX1P55347 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.86■■□□□ 1.09
PKNOX1P55347 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.86■■□□□ 1.09
PKNOX1P55347 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
PKNOX1P55347 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PKNOX1P55347 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PKNOX1P55347 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.86■■□□□ 1.09
PKNOX1P55347 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.86■■□□□ 1.09
PKNOX1P55347 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PKNOX1P55347 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PKNOX1P55347 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PKNOX1P55347 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.85■■□□□ 1.09
PKNOX1P55347 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.85■■□□□ 1.09
PKNOX1P55347 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PKNOX1P55347 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.85■■□□□ 1.09
PKNOX1P55347 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
PKNOX1P55347 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PKNOX1P55347 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.84■■□□□ 1.09
PKNOX1P55347 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.84■■□□□ 1.09
PKNOX1P55347 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PKNOX1P55347 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PKNOX1P55347 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PKNOX1P55347 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PKNOX1P55347 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.84■■□□□ 1.09
PKNOX1P55347 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PKNOX1P55347 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
PKNOX1P55347 AC079630.1-202ENST00000618127 1840 ntBASIC21.84■■□□□ 1.09
PKNOX1P55347 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PKNOX1P55347 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PKNOX1P55347 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PKNOX1P55347 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
PKNOX1P55347 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PKNOX1P55347 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
PKNOX1P55347 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
PKNOX1P55347 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PKNOX1P55347 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PKNOX1P55347 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PKNOX1P55347 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.83■■□□□ 1.09
PKNOX1P55347 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
PKNOX1P55347 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
PKNOX1P55347 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
PKNOX1P55347 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.82■■□□□ 1.08
PKNOX1P55347 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PKNOX1P55347 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.82■■□□□ 1.08
PKNOX1P55347 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PKNOX1P55347 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PKNOX1P55347 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PKNOX1P55347 AC103834.1-201ENST00000520383 144 ntBASIC21.82■■□□□ 1.08
PKNOX1P55347 AL033527.3-201ENST00000566366 1196 ntBASIC21.82■■□□□ 1.08
PKNOX1P55347 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms