Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
POLR2J3Q9H1A7 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
POLR2J3Q9H1A7 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.74■□□□□ 0.91
POLR2J3Q9H1A7 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
POLR2J3Q9H1A7 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
POLR2J3Q9H1A7 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 AC004448.1-201ENST00000458332 883 ntBASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.73■□□□□ 0.91
POLR2J3Q9H1A7 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
POLR2J3Q9H1A7 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
POLR2J3Q9H1A7 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
POLR2J3Q9H1A7 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
POLR2J3Q9H1A7 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
POLR2J3Q9H1A7 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.72■□□□□ 0.91
POLR2J3Q9H1A7 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
POLR2J3Q9H1A7 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.72■□□□□ 0.91
POLR2J3Q9H1A7 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 PVT1_1.1-201ENST00000615125 194 ntBASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
POLR2J3Q9H1A7 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.7■□□□□ 0.9
POLR2J3Q9H1A7 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.7■□□□□ 0.9
POLR2J3Q9H1A7 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.7■□□□□ 0.9
POLR2J3Q9H1A7 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.7■□□□□ 0.9
POLR2J3Q9H1A7 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
POLR2J3Q9H1A7 MIR4508-201ENST00000584178 70 ntBASIC20.7■□□□□ 0.9
POLR2J3Q9H1A7 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.7■□□□□ 0.9
POLR2J3Q9H1A7 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
POLR2J3Q9H1A7 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.7■□□□□ 0.9
POLR2J3Q9H1A7 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
POLR2J3Q9H1A7 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
POLR2J3Q9H1A7 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.69■□□□□ 0.9
POLR2J3Q9H1A7 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
POLR2J3Q9H1A7 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
POLR2J3Q9H1A7 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.69■□□□□ 0.9
POLR2J3Q9H1A7 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.69■□□□□ 0.9
POLR2J3Q9H1A7 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.69■□□□□ 0.9
POLR2J3Q9H1A7 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
POLR2J3Q9H1A7 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
POLR2J3Q9H1A7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
POLR2J3Q9H1A7 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
POLR2J3Q9H1A7 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
POLR2J3Q9H1A7 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.68■□□□□ 0.9
POLR2J3Q9H1A7 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.68■□□□□ 0.9
POLR2J3Q9H1A7 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
POLR2J3Q9H1A7 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.68■□□□□ 0.9
POLR2J3Q9H1A7 LINC00565-201ENST00000562710 2331 ntBASIC20.67■□□□□ 0.9
POLR2J3Q9H1A7 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
POLR2J3Q9H1A7 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.67■□□□□ 0.9
POLR2J3Q9H1A7 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
POLR2J3Q9H1A7 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
POLR2J3Q9H1A7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.67■□□□□ 0.9
POLR2J3Q9H1A7 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
POLR2J3Q9H1A7 GUSBP5-202ENST00000510805 1989 ntBASIC20.66■□□□□ 0.9
POLR2J3Q9H1A7 AC010980.1-201ENST00000587192 1142 ntBASIC20.66■□□□□ 0.9
POLR2J3Q9H1A7 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
POLR2J3Q9H1A7 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
POLR2J3Q9H1A7 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
POLR2J3Q9H1A7 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
POLR2J3Q9H1A7 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms