Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TFF3Q07654 TSPY26P-201ENST00000476365 1326 ntBASIC19.8■□□□□ 0.76
TFF3Q07654 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TFF3Q07654 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TFF3Q07654 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TFF3Q07654 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TFF3Q07654 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.8■□□□□ 0.76
TFF3Q07654 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.8■□□□□ 0.76
TFF3Q07654 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.8■□□□□ 0.76
TFF3Q07654 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TFF3Q07654 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TFF3Q07654 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TFF3Q07654 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
TFF3Q07654 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TFF3Q07654 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TFF3Q07654 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TFF3Q07654 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TFF3Q07654 SLC47A1P1-202ENST00000449666 945 ntBASIC19.79■□□□□ 0.76
TFF3Q07654 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.79■□□□□ 0.76
TFF3Q07654 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TFF3Q07654 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TFF3Q07654 DUX4L2-201ENST00000561772 1275 ntBASIC19.79■□□□□ 0.76
TFF3Q07654 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
TFF3Q07654 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.79■□□□□ 0.76
TFF3Q07654 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.79■□□□□ 0.76
TFF3Q07654 AC092437.1-201ENST00000624794 1048 ntBASIC19.79■□□□□ 0.76
TFF3Q07654 DUX4L6-201ENST00000626483 1275 ntBASIC19.79■□□□□ 0.76
TFF3Q07654 DUX4L1-201ENST00000627662 1275 ntBASIC19.79■□□□□ 0.76
TFF3Q07654 DUX4L8-201ENST00000629013 1275 ntBASIC19.79■□□□□ 0.76
TFF3Q07654 DUX4L3-201ENST00000630187 1275 ntBASIC19.79■□□□□ 0.76
TFF3Q07654 DUX4L7-201ENST00000630678 1275 ntBASIC19.79■□□□□ 0.76
TFF3Q07654 DUX4L5-201ENST00000630834 1275 ntBASIC19.79■□□□□ 0.76
TFF3Q07654 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TFF3Q07654 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
TFF3Q07654 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TFF3Q07654 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TFF3Q07654 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
TFF3Q07654 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TFF3Q07654 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.78■□□□□ 0.76
TFF3Q07654 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
TFF3Q07654 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TFF3Q07654 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TFF3Q07654 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.78■□□□□ 0.76
TFF3Q07654 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TFF3Q07654 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
TFF3Q07654 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TFF3Q07654 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.78■□□□□ 0.76
TFF3Q07654 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.78■□□□□ 0.76
TFF3Q07654 AC027612.3-201ENST00000413684 1047 ntBASIC19.78■□□□□ 0.76
TFF3Q07654 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.78■□□□□ 0.76
TFF3Q07654 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.78■□□□□ 0.76
TFF3Q07654 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TFF3Q07654 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.78■□□□□ 0.76
TFF3Q07654 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.78■□□□□ 0.76
TFF3Q07654 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.78■□□□□ 0.76
TFF3Q07654 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.78■□□□□ 0.76
TFF3Q07654 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.78■□□□□ 0.76
TFF3Q07654 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
TFF3Q07654 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TFF3Q07654 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.78■□□□□ 0.76
TFF3Q07654 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
TFF3Q07654 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.78■□□□□ 0.76
TFF3Q07654 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TFF3Q07654 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.77■□□□□ 0.76
TFF3Q07654 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.77■□□□□ 0.76
TFF3Q07654 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TFF3Q07654 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TFF3Q07654 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
TFF3Q07654 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TFF3Q07654 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.77■□□□□ 0.76
TFF3Q07654 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.77■□□□□ 0.76
TFF3Q07654 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
TFF3Q07654 AL358852.1-201ENST00000623174 1268 ntBASIC19.77■□□□□ 0.76
TFF3Q07654 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TFF3Q07654 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.77■□□□□ 0.76
TFF3Q07654 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
TFF3Q07654 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
TFF3Q07654 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
TFF3Q07654 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TFF3Q07654 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.76■□□□□ 0.75
TFF3Q07654 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TFF3Q07654 AC141586.4-201ENST00000624558 1573 ntBASIC19.76■□□□□ 0.75
TFF3Q07654 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TFF3Q07654 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.76■□□□□ 0.75
TFF3Q07654 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.76■□□□□ 0.75
TFF3Q07654 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.76■□□□□ 0.75
TFF3Q07654 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.76■□□□□ 0.75
TFF3Q07654 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TFF3Q07654 AC123595.1-201ENST00000440769 1046 ntBASIC19.76■□□□□ 0.75
TFF3Q07654 AL137784.2-201ENST00000607332 1000 ntBASIC19.76■□□□□ 0.75
TFF3Q07654 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TFF3Q07654 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TFF3Q07654 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
TFF3Q07654 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TFF3Q07654 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.76■□□□□ 0.75
TFF3Q07654 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.76■□□□□ 0.75
TFF3Q07654 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TFF3Q07654 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
TFF3Q07654 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TFF3Q07654 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms