Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 HNRNPK-206ENST00000457156 1283 ntTSL 524.51■■□□□ 1.513e-10■□□□□ 8.1
YBX3P16989 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.863e-10■□□□□ 8.1
YBX3P16989 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.183e-10■□□□□ 8.1
YBX3P16989 SLC39A7-203ENST00000444757 1015 ntTSL 515.28■□□□□ 0.043e-10■□□□□ 8.1
YBX3P16989 HNRNPK-201ENST00000351839 2652 ntAPPRIS ALT1 TSL 1 (best) BASIC10.06□□□□□ -0.83e-10■□□□□ 8.1
YBX3P16989 SND1-203ENST00000463020 793 ntTSL 222.19■■□□□ 1.142e-15■□□□□ 8.1
YBX3P16989 MGA-210ENST00000568630 584 ntTSL 320.32■□□□□ 0.842e-6■□□□□ 8.1
YBX3P16989 RPL29-206ENST00000481629 880 ntTSL 2 BASIC11.75□□□□□ -0.533e-51■□□□□ 8.1
YBX3P16989 RPL29-207ENST00000486565 574 ntTSL 1 (best)9.33□□□□□ -0.923e-51■□□□□ 8.1
YBX3P16989 NIPSNAP1-206ENST00000496944 586 ntTSL 226.88■■□□□ 1.891e-7■□□□□ 8.1
YBX3P16989 UFSP2-204ENST00000505357 490 ntTSL 320.86■□□□□ 0.931e-7■□□□□ 8.1
YBX3P16989 UFSP2-203ENST00000502428 565 ntTSL 417.37■□□□□ 0.371e-7■□□□□ 8.1
YBX3P16989 UFSP2-209ENST00000514247 2348 ntTSL 216.62■□□□□ 0.251e-7■□□□□ 8.1
YBX3P16989 UFSP2-201ENST00000264689 1630 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.111e-7■□□□□ 8.1
YBX3P16989 AP000902.1-201ENST00000578806 368 ntBASIC14.84□□□□□ -0.031e-7■□□□□ 8.1
YBX3P16989 RAB11A-207ENST00000568850 551 ntTSL 414.74□□□□□ -0.051e-11■□□□□ 8.1
YBX3P16989 UFSP2-207ENST00000510755 1672 ntTSL 513.45□□□□□ -0.261e-7■□□□□ 8.1
YBX3P16989 YEATS2-201ENST00000305135 6506 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.351e-7■□□□□ 8.1
YBX3P16989 ANK1-213ENST00000524069 729 ntTSL 311.3□□□□□ -0.61e-7■□□□□ 8.1
YBX3P16989 UFSP2-208ENST00000511485 1159 ntTSL 510.34□□□□□ -0.751e-7■□□□□ 8.1
YBX3P16989 ANK1-209ENST00000520299 3587 ntTSL 210.08□□□□□ -0.81e-7■□□□□ 8.1
YBX3P16989 ANK1-214ENST00000524227 3825 ntTSL 1 (best)9.95□□□□□ -0.821e-7■□□□□ 8.1
YBX3P16989 EIF2B3-204ENST00000439363 892 ntTSL 38.09□□□□□ -1.111e-7■□□□□ 8.1
YBX3P16989 EIF2B3-207ENST00000486491 312 ntTSL 58.07□□□□□ -1.121e-7■□□□□ 8.1
YBX3P16989 UFSP2-202ENST00000502282 367 ntTSL 56.86□□□□□ -1.311e-7■□□□□ 8.1
YBX3P16989 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.082e-35■□□□□ 8.1
YBX3P16989 SERPINA3-208ENST00000556968 1289 ntTSL 1 (best)14.86□□□□□ -0.032e-35■□□□□ 8.1
YBX3P16989 SERPINA3-202ENST00000393080 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.442e-35■□□□□ 8.1
YBX3P16989 SERPINA3-204ENST00000482740 2420 ntTSL 1 (best) BASIC11.82□□□□□ -0.522e-35■□□□□ 8.1
YBX3P16989 SERPINA3-201ENST00000393078 1589 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.522e-35■□□□□ 8.1
YBX3P16989 BOP1-204ENST00000569403 651 ntTSL 434.45■■■■□ 3.111e-7■□□□□ 8.1
YBX3P16989 PDCD2L-204ENST00000587385 1227 ntTSL 533.25■■■□□ 2.911e-7■□□□□ 8.1
YBX3P16989 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.371e-7■□□□□ 8.1
YBX3P16989 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.271e-7■□□□□ 8.1
YBX3P16989 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.191e-7■□□□□ 8.1
YBX3P16989 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC27.56■■■□□ 21e-7■□□□□ 8.1
YBX3P16989 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.971e-7■□□□□ 8.1
YBX3P16989 SLC52A2-206ENST00000526779 881 ntTSL 526.75■■□□□ 1.871e-7■□□□□ 8.1
YBX3P16989 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC26.35■■□□□ 1.811e-7■□□□□ 8.1
YBX3P16989 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC26.02■■□□□ 1.761e-7■□□□□ 8.1
YBX3P16989 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC25.7■■□□□ 1.71e-7■□□□□ 8.1
YBX3P16989 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC25.55■■□□□ 1.681e-7■□□□□ 8.1
YBX3P16989 ARFRP1-211ENST00000618568 1612 ntTSL 324.97■■□□□ 1.591e-7■□□□□ 8.1
YBX3P16989 FOXK2-206ENST00000531030 805 ntTSL 324.27■■□□□ 1.481e-7■□□□□ 8.1
YBX3P16989 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.421e-7■□□□□ 8.1
YBX3P16989 DCAF15-204ENST00000588523 989 ntTSL 523.27■■□□□ 1.321e-7■□□□□ 8.1
YBX3P16989 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.311e-7■□□□□ 8.1
YBX3P16989 PRPSAP2-202ENST00000395656 1540 ntTSL 223.2■■□□□ 1.31e-7■□□□□ 8.1
YBX3P16989 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.31e-7■□□□□ 8.1
YBX3P16989 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.251e-7■□□□□ 8.1
YBX3P16989 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC22.88■■□□□ 1.251e-7■□□□□ 8.1
YBX3P16989 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.221e-7■□□□□ 8.1
YBX3P16989 SLC52A2-204ENST00000526338 655 ntTSL 322.13■■□□□ 1.131e-7■□□□□ 8.1
YBX3P16989 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.11e-7■□□□□ 8.1
YBX3P16989 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.081e-7■□□□□ 8.1
YBX3P16989 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.31■■□□□ 11e-7■□□□□ 8.1
YBX3P16989 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 11e-7■□□□□ 8.1
YBX3P16989 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC20.86■□□□□ 0.931e-7■□□□□ 8.1
YBX3P16989 NT5DC2-213ENST00000489316 772 ntTSL 520.64■□□□□ 0.891e-7■□□□□ 8.1
YBX3P16989 PRPSAP2-212ENST00000466106 1419 ntTSL 220.32■□□□□ 0.841e-7■□□□□ 8.1
YBX3P16989 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.841e-7■□□□□ 8.1
YBX3P16989 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.22■□□□□ 0.831e-7■□□□□ 8.1
YBX3P16989 POLR2A-208ENST00000576952 532 ntTSL 219.93■□□□□ 0.781e-7■□□□□ 8.1
YBX3P16989 ARFRP1-204ENST00000609537 593 ntTSL 319.86■□□□□ 0.771e-7■□□□□ 8.1
YBX3P16989 LZTR1-205ENST00000439171 635 ntTSL 519.45■□□□□ 0.71e-7■□□□□ 8.1
YBX3P16989 BOP1-203ENST00000569160 734 ntTSL 219.1■□□□□ 0.651e-7■□□□□ 8.1
YBX3P16989 FOXK2-203ENST00000526383 786 ntTSL 518.97■□□□□ 0.631e-7■□□□□ 8.1
YBX3P16989 FOXK2-207ENST00000570585 756 ntTSL 318.97■□□□□ 0.631e-7■□□□□ 8.1
YBX3P16989 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.561e-7■□□□□ 8.1
YBX3P16989 DCAF15-205ENST00000591385 431 ntTSL 218.52■□□□□ 0.561e-7■□□□□ 8.1
YBX3P16989 DCAF15-203ENST00000587307 711 ntTSL 218.25■□□□□ 0.511e-7■□□□□ 8.1
YBX3P16989 NT5DC2-208ENST00000471522 582 ntTSL 317.81■□□□□ 0.441e-7■□□□□ 8.1
YBX3P16989 LIMD1-203ENST00000465039 676 ntTSL 517.38■□□□□ 0.371e-7■□□□□ 8.1
YBX3P16989 LZTR1-218ENST00000498649 1044 ntTSL 317.34■□□□□ 0.371e-7■□□□□ 8.1
YBX3P16989 NT5DC2-214ENST00000490681 560 ntTSL 417.13■□□□□ 0.331e-7■□□□□ 8.1
YBX3P16989 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.46■□□□□ 0.221e-7■□□□□ 8.1
YBX3P16989 LZTR1-203ENST00000415354 648 ntTSL 316■□□□□ 0.151e-7■□□□□ 8.1
YBX3P16989 NT5DC2-212ENST00000487779 536 ntTSL 315.95■□□□□ 0.141e-7■□□□□ 8.1
YBX3P16989 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC15.47■□□□□ 0.071e-7■□□□□ 8.1
YBX3P16989 PRPSAP2-228ENST00000610773 1905 ntTSL 1 (best) BASIC15.35■□□□□ 0.051e-7■□□□□ 8.1
YBX3P16989 LZTR1-207ENST00000452988 878 ntTSL 315.29■□□□□ 0.041e-7■□□□□ 8.1
YBX3P16989 CDK5RAP2-217ENST00000484546 1269 ntTSL 1 (best)15.14■□□□□ 0.011e-7■□□□□ 8.1
YBX3P16989 CDK5RAP2-219ENST00000495406 635 ntTSL 214.93□□□□□ -0.021e-7■□□□□ 8.1
YBX3P16989 CDK5RAP2-206ENST00000433194 815 ntTSL 314.65□□□□□ -0.061e-7■□□□□ 8.1
YBX3P16989 PRPSAP2-222ENST00000574451 1019 ntTSL 314.08□□□□□ -0.161e-7■□□□□ 8.1
YBX3P16989 PRPSAP2-215ENST00000492129 1835 ntTSL 1 (best)13.8□□□□□ -0.21e-7■□□□□ 8.1
YBX3P16989 CDK5RAP2-213ENST00000480467 931 ntTSL 313.38□□□□□ -0.271e-7■□□□□ 8.1
YBX3P16989 PDCD2L-202ENST00000585821 594 ntTSL 212.5□□□□□ -0.411e-7■□□□□ 8.1
YBX3P16989 PRPSAP2-205ENST00000419071 1491 ntTSL 2 BASIC11.97□□□□□ -0.491e-7■□□□□ 8.1
YBX3P16989 EIF4A3-208ENST00000576573 697 ntTSL 211.91□□□□□ -0.51e-7■□□□□ 8.1
YBX3P16989 FCGR2A-207ENST00000471026 731 ntTSL 311.14□□□□□ -0.631e-7■□□□□ 8.1
YBX3P16989 CDK5RAP2-210ENST00000474262 549 ntTSL 210.97□□□□□ -0.651e-7■□□□□ 8.1
YBX3P16989 LIMD1-204ENST00000474665 513 ntTSL 39.61□□□□□ -0.871e-7■□□□□ 8.1
YBX3P16989 ARFRP1-201ENST00000424545 384 ntTSL 29.35□□□□□ -0.911e-7■□□□□ 8.1
YBX3P16989 EIF4A3-202ENST00000570625 562 ntTSL 29.19□□□□□ -0.941e-7■□□□□ 8.1
YBX3P16989 EIF4A3-206ENST00000575978 3593 ntTSL 28.49□□□□□ -1.051e-7■□□□□ 8.1
YBX3P16989 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.121e-7■□□□□ 8.1
YBX3P16989 PDCD2L-205ENST00000589589 411 ntTSL 26.72□□□□□ -1.331e-7■□□□□ 8.1
YBX3P16989 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.658e-8■□□□□ 8.1
YBX3P16989 GALNT2-202ENST00000485438 4030 ntTSL 511.23□□□□□ -0.618e-8■□□□□ 8.1
Retrieved 100 of 29,075 protein–RNA pairs in 629.6 ms