RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 NISCHQ9Y2I1 1504 aa16.85■□□□□ 0.29
LIMD1-204ENST00000474665 ABCC9O60706 1549 aa15.73■□□□□ 0.11
LIMD1-204ENST00000474665 DNAJC5BQ9UF47 199 aa15.54■□□□□ 0.08
LIMD1-204ENST00000474665 CCDC180Q9P1Z9 1646 aa14.87□□□□□ -0.03
LIMD1-204ENST00000474665 DNAJC5Q9H3Z4 198 aa14.77□□□□□ -0.05
LIMD1-204ENST00000474665 PABPN1Q86U42 306 aaKnown RBP eCLIP14.6□□□□□ -0.07
LIMD1-204ENST00000474665 RB1CC1Q8TDY2 1594 aa14.52□□□□□ -0.08
LIMD1-204ENST00000474665 NACADO15069 1562 aa14.22□□□□□ -0.13
LIMD1-204ENST00000474665 CECR2Q9BXF3 1484 aa14.22□□□□□ -0.13
LIMD1-204ENST00000474665 DCAF8L2P0C7V8 631 aa14.21□□□□□ -0.13
LIMD1-204ENST00000474665 UNC13AQ9UPW8 1703 aa14.18□□□□□ -0.14
LIMD1-204ENST00000474665 BICRAQ9NZM4 1560 aa14.17□□□□□ -0.14
LIMD1-204ENST00000474665 CC2D2AQ9P2K1 1620 aa14.11□□□□□ -0.15
LIMD1-204ENST00000474665 ZCCHC6Q5VYS8 1495 aaKnown RBP14.06□□□□□ -0.16
LIMD1-204ENST00000474665 MYO15BQ96JP2 1530 aa13.92□□□□□ -0.18
LIMD1-204ENST00000474665 DCAF1Q9Y4B6 1507 aa13.92□□□□□ -0.18
LIMD1-204ENST00000474665 EIF4G1Q04637 1599 aaKnown RBP13.88□□□□□ -0.19
LIMD1-204ENST00000474665 TRIM41Q8WV44 630 aa13.86□□□□□ -0.19
LIMD1-204ENST00000474665 CUX2O14529 1486 aa13.79□□□□□ -0.2
LIMD1-204ENST00000474665 SHROOM4Q9ULL8 1493 aa13.77□□□□□ -0.21
LIMD1-204ENST00000474665 SCRIBQ14160 1630 aa13.6□□□□□ -0.23
LIMD1-204ENST00000474665 ERCC6Q03468 1493 aa13.6□□□□□ -0.23
LIMD1-204ENST00000474665 NESP48681 1621 aa13.3□□□□□ -0.28
LIMD1-204ENST00000474665 THOC2Q8NI27 1593 aaKnown RBP13.22□□□□□ -0.29
LIMD1-204ENST00000474665 AEBP2Q6ZN18 517 aaPredicted RBP13.2□□□□□ -0.3
LIMD1-204ENST00000474665 NCAPD3P42695 1498 aa13.18□□□□□ -0.3
LIMD1-204ENST00000474665 SMARCA2P51531 1590 aa13.12□□□□□ -0.31
LIMD1-204ENST00000474665 OSCARQ8IYS5 282 aa13.12□□□□□ -0.31
LIMD1-204ENST00000474665 ATAD2BQ9ULI0 1458 aa13.05□□□□□ -0.32
LIMD1-204ENST00000474665 BAZ1AQ9NRL2 1556 aaPredicted RBP13.03□□□□□ -0.32
LIMD1-204ENST00000474665 SMARCA4P51532 1647 aa13.03□□□□□ -0.32
LIMD1-204ENST00000474665 TRHP20396 242 aaPredicted RBP13.02□□□□□ -0.33
LIMD1-204ENST00000474665 KIF21AQ7Z4S6 1674 aa13.02□□□□□ -0.33
LIMD1-204ENST00000474665 MROH2BQ7Z745 1585 aa13.01□□□□□ -0.33
LIMD1-204ENST00000474665 RIMBP3CA6NJZ7 1639 aa12.98□□□□□ -0.33
LIMD1-204ENST00000474665 RIMBP3BA6NNM3 1639 aa12.98□□□□□ -0.33
LIMD1-204ENST00000474665 RIMBP3Q9UFD9 1639 aa12.98□□□□□ -0.33
LIMD1-204ENST00000474665 LAMC3Q9Y6N6 1575 aa12.96□□□□□ -0.33
LIMD1-204ENST00000474665 HMGXB3Q12766 1538 aa12.96□□□□□ -0.33
LIMD1-204ENST00000474665 PDS5BQ9NTI5 1447 aa12.96□□□□□ -0.34
LIMD1-204ENST00000474665 CYB5RLQ6IPT4 315 aa12.92□□□□□ -0.34
LIMD1-204ENST00000474665 RSF1Q96T23 1441 aaPredicted RBP12.91□□□□□ -0.34
LIMD1-204ENST00000474665 PEG3Q9GZU2 1588 aa12.9□□□□□ -0.34
LIMD1-204ENST00000474665 MRC2Q9UBG0 1479 aa12.9□□□□□ -0.34
LIMD1-204ENST00000474665 BAZ1BQ9UIG0 1483 aaKnown RBP12.87□□□□□ -0.35
LIMD1-204ENST00000474665 WIZO95785 1651 aa12.86□□□□□ -0.35
LIMD1-204ENST00000474665 ARHGEF11O15085 1522 aa12.86□□□□□ -0.35
LIMD1-204ENST00000474665 WDR62O43379 1518 aa12.86□□□□□ -0.35
LIMD1-204ENST00000474665 ILDR1Q86SU0 546 aaPredicted RBP12.81□□□□□ -0.36
LIMD1-204ENST00000474665 CADPSQ9ULU8 1353 aa12.77□□□□□ -0.37
LIMD1-204ENST00000474665 TOP2AP11388 1531 aaKnown RBP12.7□□□□□ -0.38
LIMD1-204ENST00000474665 ARAP1Q96P48 1450 aa12.69□□□□□ -0.38
LIMD1-204ENST00000474665 CEP164Q9UPV0 1460 aa12.68□□□□□ -0.38
LIMD1-204ENST00000474665 SUPT5HO00267 1087 aaKnown RBP12.65□□□□□ -0.38
LIMD1-204ENST00000474665 FANCD2Q9BXW9 1451 aa12.62□□□□□ -0.39
LIMD1-204ENST00000474665 CCDC88BA6NC98 1476 aa12.59□□□□□ -0.39
LIMD1-204ENST00000474665 URB2Q14146 1524 aaKnown RBP12.58□□□□□ -0.4
LIMD1-204ENST00000474665 ZNF608Q9ULD9 1512 aaPredicted RBP12.58□□□□□ -0.4
LIMD1-204ENST00000474665 FBLN2P98095 1184 aa12.51□□□□□ -0.41
LIMD1-204ENST00000474665 CFTRP13569 1480 aa12.49□□□□□ -0.41
LIMD1-204ENST00000474665 IFT140Q96RY7 1462 aa12.46□□□□□ -0.42
LIMD1-204ENST00000474665 CHD1O14646 1710 aa12.45□□□□□ -0.42
LIMD1-204ENST00000474665 EIF4G3O43432 1585 aaKnown RBP12.39□□□□□ -0.43
LIMD1-204ENST00000474665 AQRO60306 1485 aaKnown RBP eCLIP12.39□□□□□ -0.432e-6■■■□□ 15.2
LIMD1-204ENST00000474665 PRDM2Q13029 1718 aa12.38□□□□□ -0.43
LIMD1-204ENST00000474665 KDM4FA0A1W2PPD8 638 aa12.37□□□□□ -0.43
LIMD1-204ENST00000474665 CLASP1Q7Z460 1538 aa12.29□□□□□ -0.44
LIMD1-204ENST00000474665 TOPBP1Q92547 1522 aa12.29□□□□□ -0.44
LIMD1-204ENST00000474665 GAPVD1Q14C86 1478 aa12.27□□□□□ -0.45
LIMD1-204ENST00000474665 CHMP7Q8WUX9 453 aaPredicted RBP12.24□□□□□ -0.45
LIMD1-204ENST00000474665 TARBP1Q13395 1621 aaKnown RBP12.22□□□□□ -0.45
LIMD1-204ENST00000474665 TDRD9Q8NDG6 1382 aaKnown RBP12.2□□□□□ -0.46
LIMD1-204ENST00000474665 SYNJ1O43426 1573 aa12.19□□□□□ -0.46
LIMD1-204ENST00000474665 CUX1P39880 1505 aa12.19□□□□□ -0.46
LIMD1-204ENST00000474665 SNAPC4Q5SXM2 1469 aa12.19□□□□□ -0.46
LIMD1-204ENST00000474665 ABCC8Q09428 1581 aa12.18□□□□□ -0.46
LIMD1-204ENST00000474665 DNMBPQ6XZF7 1577 aa12.18□□□□□ -0.46
LIMD1-204ENST00000474665 FBXO41Q8TF61 875 aa12.16□□□□□ -0.46
LIMD1-204ENST00000474665 KIF13AQ9H1H9 1805 aa12.15□□□□□ -0.46
LIMD1-204ENST00000474665 RAD54L2Q9Y4B4 1467 aa12.14□□□□□ -0.47
LIMD1-204ENST00000474665 FAM69CQ0P6D2 419 aa12.12□□□□□ -0.47
LIMD1-204ENST00000474665 POLA1P09884 1462 aaPredicted RBP12.12□□□□□ -0.47
LIMD1-204ENST00000474665 ERCC6L2Q5T890 1561 aa12.12□□□□□ -0.47
LIMD1-204ENST00000474665 WRNQ14191 1432 aaPredicted RBP eCLIP12.11□□□□□ -0.47
LIMD1-204ENST00000474665 FGD5Q6ZNL6 1462 aa12.09□□□□□ -0.47
LIMD1-204ENST00000474665 TOP2BQ02880 1626 aa12.09□□□□□ -0.47
LIMD1-204ENST00000474665 BIVM-ERCC5R4GMW8 1640 aa12.09□□□□□ -0.47
LIMD1-204ENST00000474665 HECW2Q9P2P5 1572 aa12.09□□□□□ -0.47
LIMD1-204ENST00000474665 SOGA1O94964 1423 aa12.08□□□□□ -0.48
LIMD1-204ENST00000474665 SYNJ2O15056 1496 aa12.07□□□□□ -0.48
LIMD1-204ENST00000474665 LMTK3Q96Q04 1460 aa12.07□□□□□ -0.48
LIMD1-204ENST00000474665 MAGI1Q96QZ7 1491 aaPredicted RBP12.07□□□□□ -0.48
LIMD1-204ENST00000474665 KDM6BO15054 1643 aa12.04□□□□□ -0.48
LIMD1-204ENST00000474665 GRIN2BQ13224 1484 aa12.02□□□□□ -0.48
LIMD1-204ENST00000474665 ADGRL1O94910 1474 aa12.02□□□□□ -0.49
LIMD1-204ENST00000474665 ILDR2Q71H61 639 aa12.01□□□□□ -0.49
LIMD1-204ENST00000474665 ABCC10Q5T3U5 1492 aa12.01□□□□□ -0.49
LIMD1-204ENST00000474665 WDR97A6NE52 1622 aa12□□□□□ -0.49
LIMD1-204ENST00000474665 SOCS7O14512 581 aa12□□□□□ -0.49
LIMD1-204ENST00000474665 ABCA10Q8WWZ4 1543 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms