RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 DCAF8L2P0C7V8 631 aa13.12□□□□□ -0.31
LIMD1-201ENST00000273317 PELP1Q8IZL8 1130 aaKnown RBP12.97□□□□□ -0.33
LIMD1-201ENST00000273317 NISCHQ9Y2I1 1504 aa12.75□□□□□ -0.37
LIMD1-201ENST00000273317 SUPT5HO00267 1087 aaKnown RBP12.61□□□□□ -0.39
LIMD1-201ENST00000273317 EHMT2Q96KQ7 1210 aa12.46□□□□□ -0.42
LIMD1-201ENST00000273317 MYT1Q01538 1121 aa12.44□□□□□ -0.42
LIMD1-201ENST00000273317 APLP2Q06481 763 aa12.42□□□□□ -0.42
LIMD1-201ENST00000273317 SHROOM4Q9ULL8 1493 aa12.35□□□□□ -0.43
LIMD1-201ENST00000273317 CCER1Q8TC90 406 aaPredicted RBP12.32□□□□□ -0.44
LIMD1-201ENST00000273317 FAM9AQ8IZU1 332 aaPredicted RBP12.27□□□□□ -0.44
LIMD1-201ENST00000273317 CENPBP07199 599 aaPredicted RBP12.26□□□□□ -0.45
LIMD1-201ENST00000273317 ZEB1P37275 1124 aaPredicted RBP12.25□□□□□ -0.45
LIMD1-201ENST00000273317 ERICH6Q7L0X2 663 aa12.23□□□□□ -0.45
LIMD1-201ENST00000273317 TTBK1Q5TCY1 1321 aaPredicted RBP12.08□□□□□ -0.48
LIMD1-201ENST00000273317 PCGF6Q9BYE7 350 aa12.02□□□□□ -0.49
LIMD1-201ENST00000273317 NEFLP07196 543 aa12.02□□□□□ -0.49
LIMD1-201ENST00000273317 YTHDC1Q96MU7 727 aaKnown RBP11.91□□□□□ -0.5
LIMD1-201ENST00000273317 TRIM41Q8WV44 630 aa11.82□□□□□ -0.52
LIMD1-201ENST00000273317 DAXXQ9UER7 740 aaPredicted RBP11.73□□□□□ -0.53
LIMD1-201ENST00000273317 UBTFP17480 764 aaKnown RBP11.72□□□□□ -0.53
LIMD1-201ENST00000273317 ATP1B4Q9UN42 357 aaPredicted RBP11.65□□□□□ -0.54
LIMD1-201ENST00000273317 RANGAP1P46060 587 aaPredicted RBP11.65□□□□□ -0.54
LIMD1-201ENST00000273317 TRIM26Q12899 539 aaPredicted RBP11.62□□□□□ -0.55
LIMD1-201ENST00000273317 HRCP23327 699 aa11.5□□□□□ -0.57
LIMD1-201ENST00000273317 RTL5Q5HYW3 569 aaPredicted RBP11.48□□□□□ -0.57
LIMD1-201ENST00000273317 ZNF316A6NFI3 1004 aaPredicted RBP11.45□□□□□ -0.58
LIMD1-201ENST00000273317 CNGB1Q14028 1251 aaPredicted RBP11.41□□□□□ -0.58
LIMD1-201ENST00000273317 PPARGC1BQ86YN6 1023 aaKnown RBP11.36□□□□□ -0.59
LIMD1-201ENST00000273317 POLR3GLQ9BT43 218 aa11.32□□□□□ -0.6
LIMD1-201ENST00000273317 CLSPNQ9HAW4 1339 aa11.28□□□□□ -0.6
LIMD1-201ENST00000273317 MYT1LQ9UL68 1186 aa11.26□□□□□ -0.61
LIMD1-201ENST00000273317 DIEXFQ68CQ4 756 aaKnown RBP11.25□□□□□ -0.61
LIMD1-201ENST00000273317 ITGAEP38570 1179 aa11.25□□□□□ -0.61
LIMD1-201ENST00000273317 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.25□□□□□ -0.61
LIMD1-201ENST00000273317 HNRNPUL2Q1KMD3 747 aaKnown RBP11.25□□□□□ -0.61
LIMD1-201ENST00000273317 BCANQ96GW7 911 aa11.22□□□□□ -0.61
LIMD1-201ENST00000273317 CHIC1Q5VXU3 224 aa11.17□□□□□ -0.62
LIMD1-201ENST00000273317 CDK11AQ9UQ88 783 aaPredicted RBP11.15□□□□□ -0.62
LIMD1-201ENST00000273317 SLC4A1APQ9BWU0 796 aaKnown RBP11.15□□□□□ -0.63
LIMD1-201ENST00000273317 ZBTB47Q9UFB7 747 aaPredicted RBP11.14□□□□□ -0.63
LIMD1-201ENST00000273317 BCL11AQ9H165 835 aa11.14□□□□□ -0.63
LIMD1-201ENST00000273317 EIF5BO60841 1220 aaKnown RBP11.13□□□□□ -0.63
LIMD1-201ENST00000273317 ANP32CO43423 234 aa11.12□□□□□ -0.63
LIMD1-201ENST00000273317 LOC105371045A0A1W2PR82 267 aa11.07□□□□□ -0.64
LIMD1-201ENST00000273317 FAM50AQ14320 339 aaKnown RBP11.07□□□□□ -0.64
LIMD1-201ENST00000273317 ANP32AP39687 249 aaKnown RBP11.05□□□□□ -0.64
LIMD1-201ENST00000273317 CANXP27824 592 aaKnown RBP11.03□□□□□ -0.64
LIMD1-201ENST00000273317 TRIM52Q96A61 297 aa11.02□□□□□ -0.65
LIMD1-201ENST00000273317 GTF3C3Q9Y5Q9 886 aa11.01□□□□□ -0.65
LIMD1-201ENST00000273317 ANP32BQ92688 251 aaKnown RBP10.98□□□□□ -0.65
LIMD1-201ENST00000273317 NEFMP07197 916 aa10.97□□□□□ -0.65
LIMD1-201ENST00000273317 NEUROD1Q13562 356 aa10.95□□□□□ -0.66
LIMD1-201ENST00000273317 GLIPR1L2Q4G1C9 344 aa10.94□□□□□ -0.66
LIMD1-201ENST00000273317 ACIN1Q9UKV3 1341 aaKnown RBP10.91□□□□□ -0.66
LIMD1-201ENST00000273317 ARXQ96QS3 562 aa10.9□□□□□ -0.66
LIMD1-201ENST00000273317 ZNF326Q5BKZ1 582 aaKnown RBP10.89□□□□□ -0.67
LIMD1-201ENST00000273317 NPM2Q86SE8 214 aaKnown RBP10.88□□□□□ -0.67
LIMD1-201ENST00000273317 DCAF1Q9Y4B6 1507 aa10.87□□□□□ -0.67
LIMD1-201ENST00000273317 UPF2Q9HAU5 1272 aaKnown RBP10.87□□□□□ -0.67
LIMD1-201ENST00000273317 HSP90AA1P07900 732 aaKnown RBP10.82□□□□□ -0.68
LIMD1-201ENST00000273317 CCDC180Q9P1Z9 1646 aa10.81□□□□□ -0.68
LIMD1-201ENST00000273317 TONSLQ96HA7 1378 aa10.79□□□□□ -0.68
LIMD1-201ENST00000273317 NBR1Q14596 966 aa10.79□□□□□ -0.68
LIMD1-201ENST00000273317 AMER1Q5JTC6 1135 aaPredicted RBP10.79□□□□□ -0.68
LIMD1-201ENST00000273317 SLC24A1O60721 1099 aa10.75□□□□□ -0.69
LIMD1-201ENST00000273317 ABCC9O60706 1549 aa10.73□□□□□ -0.69
LIMD1-201ENST00000273317 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.72□□□□□ -0.69
LIMD1-201ENST00000273317 SCRIBQ14160 1630 aa10.72□□□□□ -0.69
LIMD1-201ENST00000273317 FKBP8Q14318 412 aa10.68□□□□□ -0.7
LIMD1-201ENST00000273317 ANP32EQ9BTT0 268 aa10.68□□□□□ -0.7
LIMD1-201ENST00000273317 CSRNP3Q8WYN3 585 aa10.67□□□□□ -0.7
LIMD1-201ENST00000273317 DDRGK1Q96HY6 314 aa10.65□□□□□ -0.7
LIMD1-201ENST00000273317 CCDC136Q96JN2 1154 aa10.65□□□□□ -0.7
LIMD1-201ENST00000273317 HNRNPUQ00839 825 aaKnown RBP eCLIP10.65□□□□□ -0.71
LIMD1-201ENST00000273317 MYH16Q9H6N6 1097 aa10.64□□□□□ -0.71
LIMD1-201ENST00000273317 BECN1Q14457 450 aa10.63□□□□□ -0.71
LIMD1-201ENST00000273317 RTN4Q9NQC3 1192 aaKnown RBP10.62□□□□□ -0.71
LIMD1-201ENST00000273317 ESF1Q9H501 851 aaKnown RBP10.62□□□□□ -0.71
LIMD1-201ENST00000273317 FBLN2P98095 1184 aa10.62□□□□□ -0.71
LIMD1-201ENST00000273317 PABPN1Q86U42 306 aaKnown RBP eCLIP10.6□□□□□ -0.71
LIMD1-201ENST00000273317 WDR43Q15061 677 aaKnown RBP eCLIP10.59□□□□□ -0.71
LIMD1-201ENST00000273317 CDK11BP21127 795 aaKnown RBP10.59□□□□□ -0.71
LIMD1-201ENST00000273317 ZCCHC6Q5VYS8 1495 aaKnown RBP10.58□□□□□ -0.72
LIMD1-201ENST00000273317 ZNF777Q9ULD5 760 aaPredicted RBP10.58□□□□□ -0.72
LIMD1-201ENST00000273317 TMC1Q8TDI8 760 aa10.57□□□□□ -0.72
LIMD1-201ENST00000273317 TNNT2P45379 298 aaPredicted RBP10.57□□□□□ -0.72
LIMD1-201ENST00000273317 GOLGA6L22H0YM25 854 aa10.56□□□□□ -0.72
LIMD1-201ENST00000273317 FAM9BQ8IZU0 186 aa10.55□□□□□ -0.72
LIMD1-201ENST00000273317 NCLP19338 710 aaKnown RBP10.55□□□□□ -0.72
LIMD1-201ENST00000273317 STAG3Q9UJ98 1225 aa10.55□□□□□ -0.72
LIMD1-201ENST00000273317 EEA1Q15075 1411 aa10.54□□□□□ -0.72
LIMD1-201ENST00000273317 TPRNQ4KMQ1 711 aa10.53□□□□□ -0.72
LIMD1-201ENST00000273317 MRS2Q9HD23 443 aa10.53□□□□□ -0.72
LIMD1-201ENST00000273317 P3H3Q8IVL6 736 aa10.53□□□□□ -0.72
LIMD1-201ENST00000273317 DDX10Q13206 875 aaKnown RBP10.52□□□□□ -0.73
LIMD1-201ENST00000273317 TRIM44Q96DX7 344 aaPredicted RBP10.51□□□□□ -0.73
LIMD1-201ENST00000273317 CLIP1P30622 1438 aa10.51□□□□□ -0.73
LIMD1-201ENST00000273317 RSF1Q96T23 1441 aaPredicted RBP10.5□□□□□ -0.73
LIMD1-201ENST00000273317 CASC1Q6TDU7 716 aa10.5□□□□□ -0.73
LIMD1-201ENST00000273317 ARID3CA6NKF2 412 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms