RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 NISCHQ9Y2I1 1504 aa30.52■■■□□ 2.48
LIMD1-202ENST00000440097 CCDC180Q9P1Z9 1646 aa26.26■■□□□ 1.79
LIMD1-202ENST00000440097 ZCCHC6Q5VYS8 1495 aaKnown RBP25.68■■□□□ 1.7
LIMD1-202ENST00000440097 DCAF8L2P0C7V8 631 aa25.64■■□□□ 1.69
LIMD1-202ENST00000440097 SHROOM4Q9ULL8 1493 aa25.63■■□□□ 1.69
LIMD1-202ENST00000440097 DCAF1Q9Y4B6 1507 aa25.05■■□□□ 1.6
LIMD1-202ENST00000440097 ABCC9O60706 1549 aa24.93■■□□□ 1.58
LIMD1-202ENST00000440097 SUPT5HO00267 1087 aaKnown RBP24.88■■□□□ 1.57
LIMD1-202ENST00000440097 MYO15BQ96JP2 1530 aa24.56■■□□□ 1.52
LIMD1-202ENST00000440097 SCRIBQ14160 1630 aa24.52■■□□□ 1.52
LIMD1-202ENST00000440097 NACADO15069 1562 aa24.45■■□□□ 1.5
LIMD1-202ENST00000440097 RB1CC1Q8TDY2 1594 aa24.21■■□□□ 1.47
LIMD1-202ENST00000440097 RSF1Q96T23 1441 aaPredicted RBP23.91■■□□□ 1.42
LIMD1-202ENST00000440097 CECR2Q9BXF3 1484 aa23.82■■□□□ 1.4
LIMD1-202ENST00000440097 CHIC1Q5VXU3 224 aa23.81■■□□□ 1.4
LIMD1-202ENST00000440097 PABPN1Q86U42 306 aaKnown RBP eCLIP23.81■■□□□ 1.4
LIMD1-202ENST00000440097 UNC13AQ9UPW8 1703 aa23.71■■□□□ 1.39
LIMD1-202ENST00000440097 MROH2BQ7Z745 1585 aa23.68■■□□□ 1.38
LIMD1-202ENST00000440097 BAZ1AQ9NRL2 1556 aaPredicted RBP23.54■■□□□ 1.36
LIMD1-202ENST00000440097 WIZO95785 1651 aa23.52■■□□□ 1.36
LIMD1-202ENST00000440097 BICRAQ9NZM4 1560 aa23.45■■□□□ 1.34
LIMD1-202ENST00000440097 SMARCA4P51532 1647 aa23.38■■□□□ 1.33
LIMD1-202ENST00000440097 TRIM41Q8WV44 630 aa23.25■■□□□ 1.31
LIMD1-202ENST00000440097 TOP2AP11388 1531 aaKnown RBP23.18■■□□□ 1.3
LIMD1-202ENST00000440097 LOC105371045A0A1W2PR82 267 aa23.13■■□□□ 1.29
LIMD1-202ENST00000440097 HRCP23327 699 aa23.08■■□□□ 1.29
LIMD1-202ENST00000440097 CCDC88BA6NC98 1476 aa23.05■■□□□ 1.28
LIMD1-202ENST00000440097 FAM9AQ8IZU1 332 aaPredicted RBP23.02■■□□□ 1.28
LIMD1-202ENST00000440097 SMARCA2P51531 1590 aa23■■□□□ 1.27
LIMD1-202ENST00000440097 ATAD2BQ9ULI0 1458 aa22.93■■□□□ 1.26
LIMD1-202ENST00000440097 PEG3Q9GZU2 1588 aa22.93■■□□□ 1.26
LIMD1-202ENST00000440097 BAZ1BQ9UIG0 1483 aaKnown RBP22.9■■□□□ 1.26
LIMD1-202ENST00000440097 EIF4G1Q04637 1599 aaKnown RBP22.86■■□□□ 1.25
LIMD1-202ENST00000440097 EHMT2Q96KQ7 1210 aa22.85■■□□□ 1.25
LIMD1-202ENST00000440097 ABCC8Q09428 1581 aa22.79■■□□□ 1.24
LIMD1-202ENST00000440097 PCGF6Q9BYE7 350 aa22.69■■□□□ 1.22
LIMD1-202ENST00000440097 PPARGC1BQ86YN6 1023 aaKnown RBP22.61■■□□□ 1.21
LIMD1-202ENST00000440097 NCAPD3P42695 1498 aa22.6■■□□□ 1.21
LIMD1-202ENST00000440097 HMGXB3Q12766 1538 aa22.55■■□□□ 1.2
LIMD1-202ENST00000440097 WRNQ14191 1432 aaPredicted RBP eCLIP22.54■■□□□ 1.2
LIMD1-202ENST00000440097 SOGA1O94964 1423 aa22.45■■□□□ 1.19
LIMD1-202ENST00000440097 DNAJC5BQ9UF47 199 aa22.38■■□□□ 1.17
LIMD1-202ENST00000440097 SYNJ1O43426 1573 aa22.38■■□□□ 1.17
LIMD1-202ENST00000440097 CC2D2AQ9P2K1 1620 aa22.37■■□□□ 1.17
LIMD1-202ENST00000440097 RUSC2Q8N2Y8 1516 aa22.34■■□□□ 1.17
LIMD1-202ENST00000440097 CSRNP3Q8WYN3 585 aa22.34■■□□□ 1.17
LIMD1-202ENST00000440097 EEA1Q15075 1411 aa22.31■■□□□ 1.16
LIMD1-202ENST00000440097 UBTFP17480 764 aaKnown RBP22.27■■□□□ 1.16
LIMD1-202ENST00000440097 CFTRP13569 1480 aa22.24■■□□□ 1.15
LIMD1-202ENST00000440097 TRIM26Q12899 539 aaPredicted RBP22.22■■□□□ 1.15
LIMD1-202ENST00000440097 TOP2BQ02880 1626 aa22.18■■□□□ 1.14
LIMD1-202ENST00000440097 CADPSQ9ULU8 1353 aa22.15■■□□□ 1.14
LIMD1-202ENST00000440097 GOLGA3Q08378 1498 aa22.11■■□□□ 1.13
LIMD1-202ENST00000440097 CEP162Q5TB80 1403 aa22.1■■□□□ 1.13
LIMD1-202ENST00000440097 TNIKQ9UKE5 1360 aa22.09■■□□□ 1.13
LIMD1-202ENST00000440097 CUX1P39880 1505 aa22.09■■□□□ 1.13
LIMD1-202ENST00000440097 BIVM-ERCC5R4GMW8 1640 aa22.09■■□□□ 1.13
LIMD1-202ENST00000440097 CEP164Q9UPV0 1460 aa22.06■■□□□ 1.12
LIMD1-202ENST00000440097 PRDM2Q13029 1718 aa22.01■■□□□ 1.11
LIMD1-202ENST00000440097 RANGAP1P46060 587 aaPredicted RBP21.99■■□□□ 1.11
LIMD1-202ENST00000440097 KIF21BO75037 1637 aa21.97■■□□□ 1.11
LIMD1-202ENST00000440097 TTBK1Q5TCY1 1321 aaPredicted RBP21.96■■□□□ 1.11
LIMD1-202ENST00000440097 RAPGEF2Q9Y4G8 1499 aa21.95■■□□□ 1.1
LIMD1-202ENST00000440097 FANCD2Q9BXW9 1451 aa21.94■■□□□ 1.1
LIMD1-202ENST00000440097 PELP1Q8IZL8 1130 aaKnown RBP21.93■■□□□ 1.1
LIMD1-202ENST00000440097 NESP48681 1621 aa21.93■■□□□ 1.1
LIMD1-202ENST00000440097 KIF27Q86VH2 1401 aa21.93■■□□□ 1.1
LIMD1-202ENST00000440097 CLIP1P30622 1438 aa21.85■■□□□ 1.09
LIMD1-202ENST00000440097 FGD5Q6ZNL6 1462 aa21.84■■□□□ 1.09
LIMD1-202ENST00000440097 CUX2O14529 1486 aa21.83■■□□□ 1.09
LIMD1-202ENST00000440097 PRXQ9BXM0 1461 aa21.78■■□□□ 1.08
LIMD1-202ENST00000440097 ZEB1P37275 1124 aaPredicted RBP21.77■■□□□ 1.08
LIMD1-202ENST00000440097 LAMC3Q9Y6N6 1575 aa21.76■■□□□ 1.07
LIMD1-202ENST00000440097 ERICH3Q5RHP9 1530 aa21.74■■□□□ 1.07
LIMD1-202ENST00000440097 SCAF1Q9H7N4 1312 aaKnown RBP21.72■■□□□ 1.07
LIMD1-202ENST00000440097 DNMBPQ6XZF7 1577 aa21.71■■□□□ 1.07
LIMD1-202ENST00000440097 TOPBP1Q92547 1522 aa21.7■■□□□ 1.06
LIMD1-202ENST00000440097 PDS5BQ9NTI5 1447 aa21.7■■□□□ 1.06
LIMD1-202ENST00000440097 APLP2Q06481 763 aa21.69■■□□□ 1.06
LIMD1-202ENST00000440097 IGF1RP08069 1367 aa21.68■■□□□ 1.06
LIMD1-202ENST00000440097 RAD54L2Q9Y4B4 1467 aa21.68■■□□□ 1.06
LIMD1-202ENST00000440097 POLA1P09884 1462 aaPredicted RBP21.65■■□□□ 1.06
LIMD1-202ENST00000440097 VPS8Q8N3P4 1428 aa21.64■■□□□ 1.06
LIMD1-202ENST00000440097 CARMIL1Q5VZK9 1371 aa21.63■■□□□ 1.05
LIMD1-202ENST00000440097 URB2Q14146 1524 aaKnown RBP21.61■■□□□ 1.05
LIMD1-202ENST00000440097 ABCA10Q8WWZ4 1543 aa21.55■■□□□ 1.04
LIMD1-202ENST00000440097 KIF21AQ7Z4S6 1674 aa21.55■■□□□ 1.04
LIMD1-202ENST00000440097 TDRD9Q8NDG6 1382 aaKnown RBP21.49■■□□□ 1.03
LIMD1-202ENST00000440097 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.49■■□□□ 1.03
LIMD1-202ENST00000440097 ARAP1Q96P48 1450 aa21.49■■□□□ 1.03
LIMD1-202ENST00000440097 ARHGAP35Q9NRY4 1499 aa21.43■■□□□ 1.02
LIMD1-202ENST00000440097 CCER1Q8TC90 406 aaPredicted RBP21.43■■□□□ 1.02
LIMD1-202ENST00000440097 P3H3Q8IVL6 736 aa21.39■■□□□ 1.02
LIMD1-202ENST00000440097 GAPVD1Q14C86 1478 aa21.38■■□□□ 1.01
LIMD1-202ENST00000440097 HNRNPUL2Q1KMD3 747 aaKnown RBP21.36■■□□□ 1.01
LIMD1-202ENST00000440097 MRC2Q9UBG0 1479 aa21.36■■□□□ 1.01
LIMD1-202ENST00000440097 CUL7Q14999 1698 aa21.35■■□□□ 1.01
LIMD1-202ENST00000440097 WDR97A6NE52 1622 aa21.35■■□□□ 1.01
LIMD1-202ENST00000440097 KANK4Q5T7N3 995 aaPredicted RBP21.32■■□□□ 1
LIMD1-202ENST00000440097 ATP1B4Q9UN42 357 aaPredicted RBP21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 155.7 ms