Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TMEM56-RWDD3S4R434 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.48■□□□□ 0.55
TMEM56-RWDD3S4R434 ALDH1A3-203ENST00000557963 1670 ntBASIC18.48■□□□□ 0.55
TMEM56-RWDD3S4R434 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TMEM56-RWDD3S4R434 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TMEM56-RWDD3S4R434 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
TMEM56-RWDD3S4R434 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC18.48■□□□□ 0.55
TMEM56-RWDD3S4R434 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TMEM56-RWDD3S4R434 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TMEM56-RWDD3S4R434 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TMEM56-RWDD3S4R434 AC009831.1-201ENST00000580420 1582 ntBASIC18.47■□□□□ 0.55
TMEM56-RWDD3S4R434 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TMEM56-RWDD3S4R434 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TMEM56-RWDD3S4R434 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TMEM56-RWDD3S4R434 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TMEM56-RWDD3S4R434 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.47■□□□□ 0.55
TMEM56-RWDD3S4R434 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TMEM56-RWDD3S4R434 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TMEM56-RWDD3S4R434 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TMEM56-RWDD3S4R434 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TMEM56-RWDD3S4R434 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TMEM56-RWDD3S4R434 AC133552.2-201ENST00000619106 1032 ntBASIC18.46■□□□□ 0.55
TMEM56-RWDD3S4R434 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TMEM56-RWDD3S4R434 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TMEM56-RWDD3S4R434 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.46■□□□□ 0.55
TMEM56-RWDD3S4R434 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TMEM56-RWDD3S4R434 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
TMEM56-RWDD3S4R434 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TMEM56-RWDD3S4R434 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TMEM56-RWDD3S4R434 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TMEM56-RWDD3S4R434 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
TMEM56-RWDD3S4R434 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TMEM56-RWDD3S4R434 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TMEM56-RWDD3S4R434 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TMEM56-RWDD3S4R434 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TMEM56-RWDD3S4R434 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
TMEM56-RWDD3S4R434 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TMEM56-RWDD3S4R434 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TMEM56-RWDD3S4R434 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
TMEM56-RWDD3S4R434 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 AC087393.1-201ENST00000582896 145 ntBASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
TMEM56-RWDD3S4R434 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC18.43■□□□□ 0.54
TMEM56-RWDD3S4R434 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TMEM56-RWDD3S4R434 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC18.43■□□□□ 0.54
TMEM56-RWDD3S4R434 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMEM56-RWDD3S4R434 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMEM56-RWDD3S4R434 STK32C-205ENST00000456004 607 ntTSL 2 BASIC18.43■□□□□ 0.54
TMEM56-RWDD3S4R434 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMEM56-RWDD3S4R434 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMEM56-RWDD3S4R434 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TMEM56-RWDD3S4R434 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TMEM56-RWDD3S4R434 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMEM56-RWDD3S4R434 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 AC018755.3-202ENST00000596210 929 ntBASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 AC131274.2-201ENST00000580697 1507 ntBASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMEM56-RWDD3S4R434 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM56-RWDD3S4R434 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM56-RWDD3S4R434 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM56-RWDD3S4R434 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM56-RWDD3S4R434 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM56-RWDD3S4R434 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC18.41■□□□□ 0.54
TMEM56-RWDD3S4R434 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM56-RWDD3S4R434 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM56-RWDD3S4R434 AC007375.3-201ENST00000600936 2314 ntBASIC18.4■□□□□ 0.54
TMEM56-RWDD3S4R434 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC18.4■□□□□ 0.54
TMEM56-RWDD3S4R434 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.4■□□□□ 0.54
TMEM56-RWDD3S4R434 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC18.4■□□□□ 0.54
TMEM56-RWDD3S4R434 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.4■□□□□ 0.54
TMEM56-RWDD3S4R434 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
TMEM56-RWDD3S4R434 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.4■□□□□ 0.54
TMEM56-RWDD3S4R434 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms