Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 JTB-203ENST00000368589 1216 ntTSL 2 BASIC31.4■■■□□ 2.62
CCDC61Q9Y6R9 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC31.4■■■□□ 2.62
CCDC61Q9Y6R9 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC31.4■■■□□ 2.62
CCDC61Q9Y6R9 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC31.4■■■□□ 2.62
CCDC61Q9Y6R9 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
CCDC61Q9Y6R9 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CCDC61Q9Y6R9 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
CCDC61Q9Y6R9 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC31.39■■■□□ 2.61
CCDC61Q9Y6R9 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CCDC61Q9Y6R9 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CCDC61Q9Y6R9 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CCDC61Q9Y6R9 PARL-206ENST00000435888 1098 ntTSL 5 BASIC31.38■■■□□ 2.61
CCDC61Q9Y6R9 AL162430.1-201ENST00000480705 870 ntBASIC31.38■■■□□ 2.61
CCDC61Q9Y6R9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
CCDC61Q9Y6R9 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC31.38■■■□□ 2.61
CCDC61Q9Y6R9 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
CCDC61Q9Y6R9 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC31.38■■■□□ 2.61
CCDC61Q9Y6R9 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
CCDC61Q9Y6R9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC31.38■■■□□ 2.61
CCDC61Q9Y6R9 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC31.37■■■□□ 2.61
CCDC61Q9Y6R9 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC31.37■■■□□ 2.61
CCDC61Q9Y6R9 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC61Q9Y6R9 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC61Q9Y6R9 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC61Q9Y6R9 ALDH1A3-203ENST00000557963 1670 ntBASIC31.37■■■□□ 2.61
CCDC61Q9Y6R9 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
CCDC61Q9Y6R9 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
CCDC61Q9Y6R9 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CCDC61Q9Y6R9 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
CCDC61Q9Y6R9 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC31.35■■■□□ 2.61
CCDC61Q9Y6R9 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC31.35■■■□□ 2.61
CCDC61Q9Y6R9 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC31.34■■■□□ 2.61
CCDC61Q9Y6R9 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC31.34■■■□□ 2.61
CCDC61Q9Y6R9 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC31.33■■■□□ 2.61
CCDC61Q9Y6R9 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC31.33■■■□□ 2.61
CCDC61Q9Y6R9 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC61Q9Y6R9 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC61Q9Y6R9 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC31.33■■■□□ 2.61
CCDC61Q9Y6R9 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC61Q9Y6R9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC61Q9Y6R9 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
CCDC61Q9Y6R9 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC61Q9Y6R9 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC61Q9Y6R9 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
CCDC61Q9Y6R9 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CCDC61Q9Y6R9 pRNA.6-201ENST00000610482 90 ntBASIC31.32■■■□□ 2.6
CCDC61Q9Y6R9 pRNA.5-201ENST00000612139 90 ntBASIC31.32■■■□□ 2.6
CCDC61Q9Y6R9 pRNA.11-201ENST00000618423 90 ntBASIC31.32■■■□□ 2.6
CCDC61Q9Y6R9 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC31.32■■■□□ 2.6
CCDC61Q9Y6R9 pRNA.13-201ENST00000619112 90 ntBASIC31.32■■■□□ 2.6
CCDC61Q9Y6R9 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC31.32■■■□□ 2.6
CCDC61Q9Y6R9 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC31.31■■■□□ 2.6
CCDC61Q9Y6R9 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
CCDC61Q9Y6R9 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CCDC61Q9Y6R9 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CCDC61Q9Y6R9 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
CCDC61Q9Y6R9 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC31.3■■■□□ 2.6
CCDC61Q9Y6R9 EI24-204ENST00000527235 1625 ntTSL 5 BASIC31.3■■■□□ 2.6
CCDC61Q9Y6R9 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC31.3■■■□□ 2.6
CCDC61Q9Y6R9 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC31.3■■■□□ 2.6
CCDC61Q9Y6R9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC31.29■■■□□ 2.6
CCDC61Q9Y6R9 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
CCDC61Q9Y6R9 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC31.29■■■□□ 2.6
CCDC61Q9Y6R9 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
CCDC61Q9Y6R9 GRAMD4P2-201ENST00000423297 1097 ntBASIC31.29■■■□□ 2.6
CCDC61Q9Y6R9 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC31.29■■■□□ 2.6
CCDC61Q9Y6R9 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CCDC61Q9Y6R9 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
CCDC61Q9Y6R9 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC31.28■■■□□ 2.6
CCDC61Q9Y6R9 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC31.28■■■□□ 2.6
CCDC61Q9Y6R9 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
CCDC61Q9Y6R9 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CCDC61Q9Y6R9 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC31.28■■■□□ 2.6
CCDC61Q9Y6R9 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CCDC61Q9Y6R9 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CCDC61Q9Y6R9 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC31.27■■■□□ 2.6
CCDC61Q9Y6R9 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC31.27■■■□□ 2.6
CCDC61Q9Y6R9 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC31.27■■■□□ 2.6
CCDC61Q9Y6R9 AC141586.4-201ENST00000624558 1573 ntBASIC31.26■■■□□ 2.6
CCDC61Q9Y6R9 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
CCDC61Q9Y6R9 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC31.26■■■□□ 2.59
CCDC61Q9Y6R9 SP2-202ENST00000613139 908 ntTSL 5 BASIC31.26■■■□□ 2.59
CCDC61Q9Y6R9 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC31.26■■■□□ 2.59
CCDC61Q9Y6R9 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
CCDC61Q9Y6R9 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC31.25■■■□□ 2.59
CCDC61Q9Y6R9 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC31.25■■■□□ 2.59
CCDC61Q9Y6R9 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
CCDC61Q9Y6R9 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC31.25■■■□□ 2.59
CCDC61Q9Y6R9 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
CCDC61Q9Y6R9 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC61Q9Y6R9 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC31.24■■■□□ 2.59
CCDC61Q9Y6R9 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC31.24■■■□□ 2.59
CCDC61Q9Y6R9 AK1-201ENST00000223836 736 ntTSL 3 BASIC31.24■■■□□ 2.59
CCDC61Q9Y6R9 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC61Q9Y6R9 GLI3-203ENST00000437480 451 ntTSL 2 BASIC31.24■■■□□ 2.59
CCDC61Q9Y6R9 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC31.24■■■□□ 2.59
CCDC61Q9Y6R9 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC61Q9Y6R9 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC61Q9Y6R9 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC61Q9Y6R9 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC31.24■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms