Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PRPF40AO75400 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PRPF40AO75400 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
PRPF40AO75400 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC26.31■■□□□ 1.8
PRPF40AO75400 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
PRPF40AO75400 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PRPF40AO75400 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PRPF40AO75400 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
PRPF40AO75400 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
PRPF40AO75400 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC26.3■■□□□ 1.8
PRPF40AO75400 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC26.3■■□□□ 1.8
PRPF40AO75400 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
PRPF40AO75400 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PRPF40AO75400 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.3■■□□□ 1.8
PRPF40AO75400 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
PRPF40AO75400 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PRPF40AO75400 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC26.29■■□□□ 1.8
PRPF40AO75400 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PRPF40AO75400 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
PRPF40AO75400 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PRPF40AO75400 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC26.29■■□□□ 1.8
PRPF40AO75400 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
PRPF40AO75400 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PRPF40AO75400 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
PRPF40AO75400 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
PRPF40AO75400 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PRPF40AO75400 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PRPF40AO75400 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PRPF40AO75400 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
PRPF40AO75400 AC090877.2-201ENST00000558441 1738 ntBASIC26.28■■□□□ 1.8
PRPF40AO75400 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC26.28■■□□□ 1.8
PRPF40AO75400 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC26.28■■□□□ 1.8
PRPF40AO75400 HES4-204ENST00000484667 667 ntTSL 3 BASIC26.28■■□□□ 1.8
PRPF40AO75400 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
PRPF40AO75400 U85056.1-201ENST00000616429 682 ntBASIC26.28■■□□□ 1.8
PRPF40AO75400 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
PRPF40AO75400 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PRPF40AO75400 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PRPF40AO75400 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC26.28■■□□□ 1.8
PRPF40AO75400 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PRPF40AO75400 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
PRPF40AO75400 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PRPF40AO75400 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
PRPF40AO75400 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
PRPF40AO75400 CD37-213ENST00000598095 1598 ntTSL 2 BASIC26.27■■□□□ 1.8
PRPF40AO75400 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PRPF40AO75400 ECEL1P1-201ENST00000373592 1742 ntBASIC26.27■■□□□ 1.8
PRPF40AO75400 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC26.27■■□□□ 1.8
PRPF40AO75400 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC26.27■■□□□ 1.8
PRPF40AO75400 WWC2-AS2-201ENST00000578387 2183 ntBASIC26.27■■□□□ 1.8
PRPF40AO75400 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PRPF40AO75400 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
PRPF40AO75400 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PRPF40AO75400 EFS-203ENST00000429593 2610 ntTSL 2 BASIC26.26■■□□□ 1.79
PRPF40AO75400 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
PRPF40AO75400 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PRPF40AO75400 COMT-203ENST00000403184 2217 ntTSL 2 BASIC26.26■■□□□ 1.79
PRPF40AO75400 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PRPF40AO75400 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PRPF40AO75400 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC26.26■■□□□ 1.79
PRPF40AO75400 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PRPF40AO75400 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PRPF40AO75400 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
PRPF40AO75400 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
PRPF40AO75400 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
PRPF40AO75400 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
PRPF40AO75400 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC26.26■■□□□ 1.79
PRPF40AO75400 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PRPF40AO75400 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
PRPF40AO75400 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
PRPF40AO75400 AC009831.1-201ENST00000580420 1582 ntBASIC26.25■■□□□ 1.79
PRPF40AO75400 AC133552.2-201ENST00000619106 1032 ntBASIC26.25■■□□□ 1.79
PRPF40AO75400 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PRPF40AO75400 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
PRPF40AO75400 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PRPF40AO75400 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
PRPF40AO75400 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PRPF40AO75400 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC26.24■■□□□ 1.79
PRPF40AO75400 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
PRPF40AO75400 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PRPF40AO75400 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PRPF40AO75400 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PRPF40AO75400 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
PRPF40AO75400 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PRPF40AO75400 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC26.23■■□□□ 1.79
PRPF40AO75400 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
PRPF40AO75400 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
PRPF40AO75400 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PRPF40AO75400 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
PRPF40AO75400 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC26.23■■□□□ 1.79
PRPF40AO75400 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
PRPF40AO75400 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
PRPF40AO75400 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC26.23■■□□□ 1.79
PRPF40AO75400 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC26.23■■□□□ 1.79
PRPF40AO75400 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PRPF40AO75400 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PRPF40AO75400 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC26.23■■□□□ 1.79
PRPF40AO75400 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
PRPF40AO75400 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
PRPF40AO75400 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC26.22■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms