Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
TRIM39Q9HCM9 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
TRIM39Q9HCM9 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TRIM39Q9HCM9 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TRIM39Q9HCM9 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRIM39Q9HCM9 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC22.57■■□□□ 1.2
TRIM39Q9HCM9 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.57■■□□□ 1.2
TRIM39Q9HCM9 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
TRIM39Q9HCM9 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRIM39Q9HCM9 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRIM39Q9HCM9 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 ALDH1A3-203ENST00000557963 1670 ntBASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 SRR-208ENST00000576848 588 ntTSL 4 BASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
TRIM39Q9HCM9 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22.55■■□□□ 1.2
TRIM39Q9HCM9 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRIM39Q9HCM9 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRIM39Q9HCM9 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
TRIM39Q9HCM9 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.55■■□□□ 1.2
TRIM39Q9HCM9 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC22.55■■□□□ 1.2
TRIM39Q9HCM9 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC22.55■■□□□ 1.2
TRIM39Q9HCM9 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC22.55■■□□□ 1.2
TRIM39Q9HCM9 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC22.54■■□□□ 1.2
TRIM39Q9HCM9 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
TRIM39Q9HCM9 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC22.54■■□□□ 1.2
TRIM39Q9HCM9 RPP21-222ENST00000433076 577 ntTSL 2 BASIC22.54■■□□□ 1.2
TRIM39Q9HCM9 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC22.54■■□□□ 1.2
TRIM39Q9HCM9 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRIM39Q9HCM9 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
TRIM39Q9HCM9 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM39Q9HCM9 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM39Q9HCM9 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM39Q9HCM9 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC22.53■■□□□ 1.2
TRIM39Q9HCM9 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
TRIM39Q9HCM9 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC22.53■■□□□ 1.2
TRIM39Q9HCM9 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM39Q9HCM9 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22.53■■□□□ 1.2
TRIM39Q9HCM9 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRIM39Q9HCM9 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRIM39Q9HCM9 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC22.52■■□□□ 1.2
TRIM39Q9HCM9 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC22.52■■□□□ 1.2
TRIM39Q9HCM9 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRIM39Q9HCM9 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.52■■□□□ 1.2
TRIM39Q9HCM9 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRIM39Q9HCM9 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.19
TRIM39Q9HCM9 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM39Q9HCM9 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM39Q9HCM9 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
TRIM39Q9HCM9 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC22.51■■□□□ 1.19
TRIM39Q9HCM9 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.51■■□□□ 1.19
TRIM39Q9HCM9 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
TRIM39Q9HCM9 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM39Q9HCM9 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.51■■□□□ 1.19
TRIM39Q9HCM9 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.51■■□□□ 1.19
TRIM39Q9HCM9 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM39Q9HCM9 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TRIM39Q9HCM9 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.5■■□□□ 1.19
TRIM39Q9HCM9 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
TRIM39Q9HCM9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC22.5■■□□□ 1.19
TRIM39Q9HCM9 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC22.5■■□□□ 1.19
TRIM39Q9HCM9 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC22.5■■□□□ 1.19
TRIM39Q9HCM9 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
TRIM39Q9HCM9 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRIM39Q9HCM9 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
TRIM39Q9HCM9 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC22.49■■□□□ 1.19
TRIM39Q9HCM9 PREB-202ENST00000406567 1910 ntTSL 5 BASIC22.49■■□□□ 1.19
TRIM39Q9HCM9 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.49■■□□□ 1.19
TRIM39Q9HCM9 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
TRIM39Q9HCM9 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC22.49■■□□□ 1.19
TRIM39Q9HCM9 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC22.49■■□□□ 1.19
TRIM39Q9HCM9 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
TRIM39Q9HCM9 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC22.49■■□□□ 1.19
TRIM39Q9HCM9 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
TRIM39Q9HCM9 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC22.48■■□□□ 1.19
TRIM39Q9HCM9 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TRIM39Q9HCM9 AC008406.3-201ENST00000620001 1374 ntBASIC22.48■■□□□ 1.19
TRIM39Q9HCM9 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.47■■□□□ 1.19
TRIM39Q9HCM9 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM39Q9HCM9 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM39Q9HCM9 AC131281.2-201ENST00000520478 145 ntBASIC22.47■■□□□ 1.19
TRIM39Q9HCM9 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM39Q9HCM9 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC22.47■■□□□ 1.19
TRIM39Q9HCM9 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM39Q9HCM9 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
TRIM39Q9HCM9 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM39Q9HCM9 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.47■■□□□ 1.19
TRIM39Q9HCM9 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.47■■□□□ 1.19
TRIM39Q9HCM9 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM39Q9HCM9 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms