Protein–RNA interactions for Protein: A2RU48

SMCO3, Single-pass membrane and coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO3A2RU48 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO3A2RU48 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO3A2RU48 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC18.39■□□□□ 0.53
SMCO3A2RU48 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO3A2RU48 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO3A2RU48 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO3A2RU48 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
SMCO3A2RU48 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO3A2RU48 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.39■□□□□ 0.53
SMCO3A2RU48 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO3A2RU48 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SMCO3A2RU48 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.39■□□□□ 0.53
SMCO3A2RU48 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
SMCO3A2RU48 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO3A2RU48 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO3A2RU48 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMCO3A2RU48 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMCO3A2RU48 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
SMCO3A2RU48 AC016575.1-201ENST00000607026 382 ntBASIC18.38■□□□□ 0.53
SMCO3A2RU48 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMCO3A2RU48 REST-210ENST00000638187 1334 ntTSL 5 BASIC18.38■□□□□ 0.53
SMCO3A2RU48 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMCO3A2RU48 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
SMCO3A2RU48 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMCO3A2RU48 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMCO3A2RU48 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.38■□□□□ 0.53
SMCO3A2RU48 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMCO3A2RU48 AL117328.2-201ENST00000624617 1940 ntBASIC18.37■□□□□ 0.53
SMCO3A2RU48 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
SMCO3A2RU48 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
SMCO3A2RU48 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMCO3A2RU48 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMCO3A2RU48 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SMCO3A2RU48 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC18.37■□□□□ 0.53
SMCO3A2RU48 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.37■□□□□ 0.53
SMCO3A2RU48 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMCO3A2RU48 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SMCO3A2RU48 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SMCO3A2RU48 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SMCO3A2RU48 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.37■□□□□ 0.53
SMCO3A2RU48 SLC25A24-204ENST00000569674 2357 ntBASIC18.37■□□□□ 0.53
SMCO3A2RU48 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SMCO3A2RU48 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SMCO3A2RU48 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO3A2RU48 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO3A2RU48 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO3A2RU48 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC18.36■□□□□ 0.53
SMCO3A2RU48 AC060814.1-201ENST00000554326 538 ntBASIC18.36■□□□□ 0.53
SMCO3A2RU48 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO3A2RU48 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC18.36■□□□□ 0.53
SMCO3A2RU48 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
SMCO3A2RU48 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO3A2RU48 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO3A2RU48 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO3A2RU48 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SMCO3A2RU48 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.35■□□□□ 0.53
SMCO3A2RU48 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMCO3A2RU48 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SMCO3A2RU48 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
SMCO3A2RU48 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMCO3A2RU48 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.35■□□□□ 0.53
SMCO3A2RU48 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMCO3A2RU48 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMCO3A2RU48 FOXO3B-201ENST00000395675 1928 ntBASIC18.35■□□□□ 0.53
SMCO3A2RU48 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SMCO3A2RU48 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.35■□□□□ 0.53
SMCO3A2RU48 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
SMCO3A2RU48 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.34■□□□□ 0.53
SMCO3A2RU48 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC18.34■□□□□ 0.53
SMCO3A2RU48 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMCO3A2RU48 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMCO3A2RU48 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMCO3A2RU48 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SMCO3A2RU48 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SMCO3A2RU48 MACF1-219ENST00000484793 834 ntTSL 2 BASIC18.34■□□□□ 0.53
SMCO3A2RU48 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SMCO3A2RU48 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMCO3A2RU48 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.34■□□□□ 0.53
SMCO3A2RU48 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMCO3A2RU48 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.34■□□□□ 0.53
SMCO3A2RU48 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMCO3A2RU48 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMCO3A2RU48 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMCO3A2RU48 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.33■□□□□ 0.53
SMCO3A2RU48 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMCO3A2RU48 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SMCO3A2RU48 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SMCO3A2RU48 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMCO3A2RU48 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMCO3A2RU48 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMCO3A2RU48 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC18.33■□□□□ 0.52
SMCO3A2RU48 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
SMCO3A2RU48 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMCO3A2RU48 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC18.33■□□□□ 0.52
SMCO3A2RU48 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMCO3A2RU48 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.33■□□□□ 0.52
SMCO3A2RU48 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SMCO3A2RU48 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC18.33■□□□□ 0.52
SMCO3A2RU48 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMCO3A2RU48 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms