Protein–RNA interactions for Protein: Q9NQV7

PRDM9, Histone-lysine N-methyltransferase PRDM9, humanhuman

Predictions only

Length 894 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9Q9NQV7 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PRDM9Q9NQV7 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PRDM9Q9NQV7 AC004448.1-201ENST00000458332 883 ntBASIC21.65■■□□□ 1.06
PRDM9Q9NQV7 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.65■■□□□ 1.06
PRDM9Q9NQV7 MTDHP2-201ENST00000601468 714 ntBASIC21.65■■□□□ 1.06
PRDM9Q9NQV7 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.65■■□□□ 1.06
PRDM9Q9NQV7 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PRDM9Q9NQV7 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PRDM9Q9NQV7 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PRDM9Q9NQV7 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.64■■□□□ 1.06
PRDM9Q9NQV7 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PRDM9Q9NQV7 AC004812.2-201ENST00000611079 2094 ntBASIC21.64■■□□□ 1.05
PRDM9Q9NQV7 KRT16P3-201ENST00000439127 1283 ntBASIC21.64■■□□□ 1.05
PRDM9Q9NQV7 AL356441.2-201ENST00000443009 864 ntBASIC21.64■■□□□ 1.05
PRDM9Q9NQV7 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.64■■□□□ 1.05
PRDM9Q9NQV7 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.64■■□□□ 1.05
PRDM9Q9NQV7 AC010997.5-201ENST00000609182 354 ntBASIC21.64■■□□□ 1.05
PRDM9Q9NQV7 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
PRDM9Q9NQV7 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.64■■□□□ 1.05
PRDM9Q9NQV7 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PRDM9Q9NQV7 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PRDM9Q9NQV7 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
PRDM9Q9NQV7 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PRDM9Q9NQV7 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PRDM9Q9NQV7 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.63■■□□□ 1.05
PRDM9Q9NQV7 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.63■■□□□ 1.05
PRDM9Q9NQV7 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PRDM9Q9NQV7 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PRDM9Q9NQV7 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRDM9Q9NQV7 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PRDM9Q9NQV7 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRDM9Q9NQV7 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
PRDM9Q9NQV7 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.62■■□□□ 1.05
PRDM9Q9NQV7 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.62■■□□□ 1.05
PRDM9Q9NQV7 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRDM9Q9NQV7 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
PRDM9Q9NQV7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PRDM9Q9NQV7 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRDM9Q9NQV7 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRDM9Q9NQV7 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.61■■□□□ 1.05
PRDM9Q9NQV7 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
PRDM9Q9NQV7 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRDM9Q9NQV7 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PRDM9Q9NQV7 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRDM9Q9NQV7 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.61■■□□□ 1.05
PRDM9Q9NQV7 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.61■■□□□ 1.05
PRDM9Q9NQV7 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.61■■□□□ 1.05
PRDM9Q9NQV7 MIR6722-201ENST00000617286 78 ntBASIC21.61■■□□□ 1.05
PRDM9Q9NQV7 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.61■■□□□ 1.05
PRDM9Q9NQV7 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRDM9Q9NQV7 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRDM9Q9NQV7 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRDM9Q9NQV7 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PRDM9Q9NQV7 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.6■■□□□ 1.05
PRDM9Q9NQV7 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.6■■□□□ 1.05
PRDM9Q9NQV7 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.6■■□□□ 1.05
PRDM9Q9NQV7 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.6■■□□□ 1.05
PRDM9Q9NQV7 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
PRDM9Q9NQV7 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PRDM9Q9NQV7 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.59■■□□□ 1.05
PRDM9Q9NQV7 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.59■■□□□ 1.05
PRDM9Q9NQV7 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.59■■□□□ 1.05
PRDM9Q9NQV7 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PRDM9Q9NQV7 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PRDM9Q9NQV7 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
PRDM9Q9NQV7 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PRDM9Q9NQV7 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PRDM9Q9NQV7 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
PRDM9Q9NQV7 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PRDM9Q9NQV7 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PRDM9Q9NQV7 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PRDM9Q9NQV7 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PRDM9Q9NQV7 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PRDM9Q9NQV7 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PRDM9Q9NQV7 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PRDM9Q9NQV7 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PRDM9Q9NQV7 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PRDM9Q9NQV7 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PRDM9Q9NQV7 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.56■■□□□ 1.04
PRDM9Q9NQV7 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
PRDM9Q9NQV7 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
PRDM9Q9NQV7 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.56■■□□□ 1.04
PRDM9Q9NQV7 ALDH1A3-203ENST00000557963 1670 ntBASIC21.56■■□□□ 1.04
PRDM9Q9NQV7 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
PRDM9Q9NQV7 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PRDM9Q9NQV7 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PRDM9Q9NQV7 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.55■■□□□ 1.04
PRDM9Q9NQV7 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PRDM9Q9NQV7 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.55■■□□□ 1.04
PRDM9Q9NQV7 MIR6724-1-201ENST00000616420 92 ntBASIC21.55■■□□□ 1.04
PRDM9Q9NQV7 MIR6724-2-201ENST00000616483 92 ntBASIC21.55■■□□□ 1.04
PRDM9Q9NQV7 MIR6724-4-201ENST00000617390 92 ntBASIC21.55■■□□□ 1.04
PRDM9Q9NQV7 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.55■■□□□ 1.04
PRDM9Q9NQV7 MIR6724-3-201ENST00000622482 92 ntBASIC21.55■■□□□ 1.04
PRDM9Q9NQV7 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
PRDM9Q9NQV7 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
PRDM9Q9NQV7 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
PRDM9Q9NQV7 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
PRDM9Q9NQV7 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PRDM9Q9NQV7 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms