Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CL1P78423 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CL1P78423 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CX3CL1P78423 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC18.35■□□□□ 0.53
CX3CL1P78423 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.35■□□□□ 0.53
CX3CL1P78423 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC18.35■□□□□ 0.53
CX3CL1P78423 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CL1P78423 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CL1P78423 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC18.35■□□□□ 0.53
CX3CL1P78423 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CX3CL1P78423 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CX3CL1P78423 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CX3CL1P78423 CASK-201ENST00000378154 2494 ntTSL 5 BASIC18.34■□□□□ 0.53
CX3CL1P78423 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC18.34■□□□□ 0.53
CX3CL1P78423 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CX3CL1P78423 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CX3CL1P78423 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CX3CL1P78423 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC18.33■□□□□ 0.53
CX3CL1P78423 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CX3CL1P78423 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CX3CL1P78423 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.33■□□□□ 0.52
CX3CL1P78423 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC18.33■□□□□ 0.52
CX3CL1P78423 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CX3CL1P78423 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.33■□□□□ 0.52
CX3CL1P78423 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CX3CL1P78423 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.33■□□□□ 0.52
CX3CL1P78423 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CX3CL1P78423 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CX3CL1P78423 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CX3CL1P78423 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CX3CL1P78423 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CX3CL1P78423 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CX3CL1P78423 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CX3CL1P78423 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.32■□□□□ 0.52
CX3CL1P78423 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC18.32■□□□□ 0.52
CX3CL1P78423 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC18.32■□□□□ 0.52
CX3CL1P78423 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.32■□□□□ 0.52
CX3CL1P78423 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CL1P78423 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CL1P78423 AF131216.4-201ENST00000638924 1588 ntBASIC18.31■□□□□ 0.52
CX3CL1P78423 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CL1P78423 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CX3CL1P78423 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CL1P78423 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CL1P78423 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CL1P78423 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC18.31■□□□□ 0.52
CX3CL1P78423 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CL1P78423 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CX3CL1P78423 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CX3CL1P78423 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CX3CL1P78423 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CX3CL1P78423 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.3■□□□□ 0.52
CX3CL1P78423 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.3■□□□□ 0.52
CX3CL1P78423 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC18.3■□□□□ 0.52
CX3CL1P78423 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.3■□□□□ 0.52
CX3CL1P78423 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC18.29■□□□□ 0.52
CX3CL1P78423 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.29■□□□□ 0.52
CX3CL1P78423 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CL1P78423 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.29■□□□□ 0.52
CX3CL1P78423 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CL1P78423 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CX3CL1P78423 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CL1P78423 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CL1P78423 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CL1P78423 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CL1P78423 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18.28■□□□□ 0.52
CX3CL1P78423 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CL1P78423 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CL1P78423 AL022069.1-201ENST00000568025 1636 ntBASIC18.28■□□□□ 0.52
CX3CL1P78423 LBH-205ENST00000407930 756 ntTSL 2 BASIC18.28■□□□□ 0.52
CX3CL1P78423 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CL1P78423 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CX3CL1P78423 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CL1P78423 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC18.28■□□□□ 0.52
CX3CL1P78423 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CL1P78423 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CL1P78423 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CL1P78423 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CL1P78423 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CL1P78423 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CL1P78423 AL161729.1-201ENST00000604104 1402 ntBASIC18.27■□□□□ 0.52
CX3CL1P78423 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CX3CL1P78423 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CX3CL1P78423 AC137630.3-201ENST00000607245 391 ntBASIC18.27■□□□□ 0.52
CX3CL1P78423 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CL1P78423 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CL1P78423 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CX3CL1P78423 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CX3CL1P78423 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CX3CL1P78423 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CX3CL1P78423 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CL1P78423 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CL1P78423 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CL1P78423 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CL1P78423 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CX3CL1P78423 AC004812.2-201ENST00000611079 2094 ntBASIC18.26■□□□□ 0.51
CX3CL1P78423 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC18.26■□□□□ 0.51
CX3CL1P78423 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CL1P78423 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CX3CL1P78423 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms