Protein–RNA interactions for Protein: P56277

CMC4, Cx9C motif-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 68 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMC4P56277 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CMC4P56277 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CMC4P56277 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC17.06■□□□□ 0.32
CMC4P56277 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CMC4P56277 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC17.06■□□□□ 0.32
CMC4P56277 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CMC4P56277 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CMC4P56277 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CMC4P56277 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CMC4P56277 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CMC4P56277 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CMC4P56277 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CMC4P56277 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CMC4P56277 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CMC4P56277 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CMC4P56277 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CMC4P56277 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CMC4P56277 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CMC4P56277 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC17.05■□□□□ 0.32
CMC4P56277 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CMC4P56277 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CMC4P56277 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CMC4P56277 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CMC4P56277 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CMC4P56277 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CMC4P56277 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CMC4P56277 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC17.04■□□□□ 0.32
CMC4P56277 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC17.04■□□□□ 0.32
CMC4P56277 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC17.04■□□□□ 0.32
CMC4P56277 UNC93B8-201ENST00000511903 705 ntBASIC17.04■□□□□ 0.32
CMC4P56277 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CMC4P56277 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CMC4P56277 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CMC4P56277 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC17.03■□□□□ 0.32
CMC4P56277 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CMC4P56277 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CMC4P56277 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
CMC4P56277 TFPT-201ENST00000391757 774 ntTSL 5 BASIC17.03■□□□□ 0.32
CMC4P56277 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CMC4P56277 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC17.03■□□□□ 0.32
CMC4P56277 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC17.03■□□□□ 0.32
CMC4P56277 GRAMD4P7-201ENST00000578182 1232 ntBASIC17.03■□□□□ 0.32
CMC4P56277 AL356740.2-201ENST00000601559 647 ntBASIC17.03■□□□□ 0.32
CMC4P56277 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CMC4P56277 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CMC4P56277 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CMC4P56277 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CMC4P56277 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CMC4P56277 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CMC4P56277 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CMC4P56277 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CMC4P56277 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC17.02■□□□□ 0.32
CMC4P56277 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC17.02■□□□□ 0.32
CMC4P56277 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CMC4P56277 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CMC4P56277 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC17.02■□□□□ 0.32
CMC4P56277 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
CMC4P56277 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CMC4P56277 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.02■□□□□ 0.31
CMC4P56277 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CMC4P56277 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CMC4P56277 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CMC4P56277 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CMC4P56277 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CMC4P56277 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CMC4P56277 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CMC4P56277 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC17.01■□□□□ 0.31
CMC4P56277 AL356441.2-201ENST00000443009 864 ntBASIC17.01■□□□□ 0.31
CMC4P56277 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC17.01■□□□□ 0.31
CMC4P56277 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
CMC4P56277 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CMC4P56277 AL139125.2-201ENST00000623134 1869 ntBASIC17.01■□□□□ 0.31
CMC4P56277 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CMC4P56277 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CMC4P56277 ALDH1A3-203ENST00000557963 1670 ntBASIC17.01■□□□□ 0.31
CMC4P56277 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CMC4P56277 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CMC4P56277 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC17■□□□□ 0.31
CMC4P56277 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CMC4P56277 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CMC4P56277 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CMC4P56277 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CMC4P56277 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC17■□□□□ 0.31
CMC4P56277 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC17■□□□□ 0.31
CMC4P56277 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CMC4P56277 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CMC4P56277 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CMC4P56277 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CMC4P56277 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CMC4P56277 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CMC4P56277 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CMC4P56277 CD72-202ENST00000378430 585 ntTSL 3 BASIC16.99■□□□□ 0.31
CMC4P56277 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC16.99■□□□□ 0.31
CMC4P56277 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CMC4P56277 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC16.99■□□□□ 0.31
CMC4P56277 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CMC4P56277 LINC01124-201ENST00000409786 2117 ntBASIC16.99■□□□□ 0.31
CMC4P56277 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CMC4P56277 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC16.98■□□□□ 0.31
CMC4P56277 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms