Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LSM1O15116 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
LSM1O15116 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
LSM1O15116 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC22.05■■□□□ 1.12
LSM1O15116 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
LSM1O15116 CLDN5-201ENST00000403084 2357 ntBASIC22.05■■□□□ 1.12
LSM1O15116 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
LSM1O15116 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
LSM1O15116 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
LSM1O15116 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC22.04■■□□□ 1.12
LSM1O15116 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.04■■□□□ 1.12
LSM1O15116 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
LSM1O15116 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
LSM1O15116 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.04■■□□□ 1.12
LSM1O15116 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
LSM1O15116 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC22.04■■□□□ 1.12
LSM1O15116 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
LSM1O15116 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
LSM1O15116 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
LSM1O15116 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC22.02■■□□□ 1.12
LSM1O15116 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.02■■□□□ 1.12
LSM1O15116 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
LSM1O15116 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
LSM1O15116 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LSM1O15116 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LSM1O15116 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LSM1O15116 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.01■■□□□ 1.11
LSM1O15116 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LSM1O15116 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC22.01■■□□□ 1.11
LSM1O15116 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LSM1O15116 AC011551.1-201ENST00000614101 683 ntBASIC22.01■■□□□ 1.11
LSM1O15116 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LSM1O15116 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
LSM1O15116 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22■■□□□ 1.11
LSM1O15116 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC22■■□□□ 1.11
LSM1O15116 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC22■■□□□ 1.11
LSM1O15116 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LSM1O15116 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LSM1O15116 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LSM1O15116 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC22■■□□□ 1.11
LSM1O15116 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LSM1O15116 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22■■□□□ 1.11
LSM1O15116 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC22■■□□□ 1.11
LSM1O15116 ANOS2P-203ENST00000472227 1816 ntBASIC22■■□□□ 1.11
LSM1O15116 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LSM1O15116 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
LSM1O15116 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LSM1O15116 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.99■■□□□ 1.11
LSM1O15116 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LSM1O15116 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LSM1O15116 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.99■■□□□ 1.11
LSM1O15116 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.99■■□□□ 1.11
LSM1O15116 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LSM1O15116 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.99■■□□□ 1.11
LSM1O15116 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
LSM1O15116 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LSM1O15116 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LSM1O15116 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LSM1O15116 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.99■■□□□ 1.11
LSM1O15116 AL022069.1-201ENST00000568025 1636 ntBASIC21.98■■□□□ 1.11
LSM1O15116 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
LSM1O15116 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LSM1O15116 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LSM1O15116 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
LSM1O15116 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
LSM1O15116 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.98■■□□□ 1.11
LSM1O15116 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.98■■□□□ 1.11
LSM1O15116 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LSM1O15116 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LSM1O15116 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
LSM1O15116 AC019171.1-201ENST00000601251 1056 ntBASIC21.98■■□□□ 1.11
LSM1O15116 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
LSM1O15116 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LSM1O15116 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
LSM1O15116 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
LSM1O15116 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
LSM1O15116 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LSM1O15116 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
LSM1O15116 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LSM1O15116 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.97■■□□□ 1.11
LSM1O15116 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
LSM1O15116 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LSM1O15116 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LSM1O15116 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LSM1O15116 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
LSM1O15116 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.96■■□□□ 1.11
LSM1O15116 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
LSM1O15116 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.96■■□□□ 1.11
LSM1O15116 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
LSM1O15116 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.96■■□□□ 1.11
LSM1O15116 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.96■■□□□ 1.11
LSM1O15116 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.96■■□□□ 1.11
LSM1O15116 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LSM1O15116 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.11
LSM1O15116 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
LSM1O15116 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
LSM1O15116 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
LSM1O15116 AC092068.2-201ENST00000590491 1708 ntBASIC21.95■■□□□ 1.1
LSM1O15116 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LSM1O15116 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms