Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
POLR2J3Q9H1A7 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
POLR2J3Q9H1A7 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
POLR2J3Q9H1A7 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
POLR2J3Q9H1A7 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
POLR2J3Q9H1A7 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
POLR2J3Q9H1A7 RARRES2P2-201ENST00000394842 485 ntBASIC21.17■□□□□ 0.98
POLR2J3Q9H1A7 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.17■□□□□ 0.98
POLR2J3Q9H1A7 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
POLR2J3Q9H1A7 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
POLR2J3Q9H1A7 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.17■□□□□ 0.98
POLR2J3Q9H1A7 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
POLR2J3Q9H1A7 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
POLR2J3Q9H1A7 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.16■□□□□ 0.98
POLR2J3Q9H1A7 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
POLR2J3Q9H1A7 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
POLR2J3Q9H1A7 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
POLR2J3Q9H1A7 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.16■□□□□ 0.98
POLR2J3Q9H1A7 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.16■□□□□ 0.98
POLR2J3Q9H1A7 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
POLR2J3Q9H1A7 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
POLR2J3Q9H1A7 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.15■□□□□ 0.98
POLR2J3Q9H1A7 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.15■□□□□ 0.98
POLR2J3Q9H1A7 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
POLR2J3Q9H1A7 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
POLR2J3Q9H1A7 DUX4L9-201ENST00000449051 1259 ntBASIC21.15■□□□□ 0.98
POLR2J3Q9H1A7 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
POLR2J3Q9H1A7 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
POLR2J3Q9H1A7 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.98
POLR2J3Q9H1A7 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
POLR2J3Q9H1A7 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
POLR2J3Q9H1A7 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.14■□□□□ 0.97
POLR2J3Q9H1A7 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
POLR2J3Q9H1A7 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.14■□□□□ 0.97
POLR2J3Q9H1A7 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
POLR2J3Q9H1A7 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
POLR2J3Q9H1A7 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 C9orf163-202ENST00000624034 2573 ntBASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 LONRF2P2-201ENST00000439212 571 ntBASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
POLR2J3Q9H1A7 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.12■□□□□ 0.97
POLR2J3Q9H1A7 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
POLR2J3Q9H1A7 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.12■□□□□ 0.97
POLR2J3Q9H1A7 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
POLR2J3Q9H1A7 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
POLR2J3Q9H1A7 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.12■□□□□ 0.97
POLR2J3Q9H1A7 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
POLR2J3Q9H1A7 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
POLR2J3Q9H1A7 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.12■□□□□ 0.97
POLR2J3Q9H1A7 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
POLR2J3Q9H1A7 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
POLR2J3Q9H1A7 AC079834.2-201ENST00000609776 1949 ntBASIC21.12■□□□□ 0.97
POLR2J3Q9H1A7 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
POLR2J3Q9H1A7 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.11■□□□□ 0.97
POLR2J3Q9H1A7 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
POLR2J3Q9H1A7 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.11■□□□□ 0.97
POLR2J3Q9H1A7 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
POLR2J3Q9H1A7 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
POLR2J3Q9H1A7 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.11■□□□□ 0.97
POLR2J3Q9H1A7 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
POLR2J3Q9H1A7 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
POLR2J3Q9H1A7 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
POLR2J3Q9H1A7 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
POLR2J3Q9H1A7 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
POLR2J3Q9H1A7 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
POLR2J3Q9H1A7 AC011551.1-201ENST00000614101 683 ntBASIC21.1■□□□□ 0.97
POLR2J3Q9H1A7 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.1■□□□□ 0.97
POLR2J3Q9H1A7 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
POLR2J3Q9H1A7 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
POLR2J3Q9H1A7 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
POLR2J3Q9H1A7 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
POLR2J3Q9H1A7 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.09■□□□□ 0.97
POLR2J3Q9H1A7 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.09■□□□□ 0.97
POLR2J3Q9H1A7 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
POLR2J3Q9H1A7 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
POLR2J3Q9H1A7 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.09■□□□□ 0.97
POLR2J3Q9H1A7 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.09■□□□□ 0.97
POLR2J3Q9H1A7 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.09■□□□□ 0.97
POLR2J3Q9H1A7 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.09■□□□□ 0.97
POLR2J3Q9H1A7 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
POLR2J3Q9H1A7 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
POLR2J3Q9H1A7 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
POLR2J3Q9H1A7 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
POLR2J3Q9H1A7 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
POLR2J3Q9H1A7 HSD17B1P1-201ENST00000590052 955 ntBASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 152.5 ms