Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF540Q8NDQ6 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.14■□□□□ 0.97
ZNF540Q8NDQ6 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.14■□□□□ 0.97
ZNF540Q8NDQ6 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.14■□□□□ 0.97
ZNF540Q8NDQ6 AC092296.2-201ENST00000589470 999 ntBASIC21.14■□□□□ 0.97
ZNF540Q8NDQ6 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF540Q8NDQ6 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.14■□□□□ 0.97
ZNF540Q8NDQ6 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF540Q8NDQ6 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF540Q8NDQ6 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF540Q8NDQ6 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF540Q8NDQ6 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.13■□□□□ 0.97
ZNF540Q8NDQ6 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.13■□□□□ 0.97
ZNF540Q8NDQ6 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.13■□□□□ 0.97
ZNF540Q8NDQ6 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF540Q8NDQ6 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF540Q8NDQ6 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.13■□□□□ 0.97
ZNF540Q8NDQ6 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF540Q8NDQ6 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF540Q8NDQ6 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF540Q8NDQ6 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
ZNF540Q8NDQ6 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF540Q8NDQ6 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
ZNF540Q8NDQ6 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
ZNF540Q8NDQ6 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
ZNF540Q8NDQ6 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
ZNF540Q8NDQ6 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
ZNF540Q8NDQ6 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF540Q8NDQ6 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF540Q8NDQ6 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF540Q8NDQ6 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF540Q8NDQ6 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.11■□□□□ 0.97
ZNF540Q8NDQ6 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF540Q8NDQ6 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF540Q8NDQ6 HLA-L-211ENST00000482052 1765 ntBASIC21.11■□□□□ 0.97
ZNF540Q8NDQ6 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.11■□□□□ 0.97
ZNF540Q8NDQ6 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF540Q8NDQ6 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF540Q8NDQ6 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF540Q8NDQ6 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF540Q8NDQ6 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
ZNF540Q8NDQ6 PKD1P6-201ENST00000343738 4769 ntBASIC21.1■□□□□ 0.97
ZNF540Q8NDQ6 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF540Q8NDQ6 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF540Q8NDQ6 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF540Q8NDQ6 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF540Q8NDQ6 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF540Q8NDQ6 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF540Q8NDQ6 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF540Q8NDQ6 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
ZNF540Q8NDQ6 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF540Q8NDQ6 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF540Q8NDQ6 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF540Q8NDQ6 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF540Q8NDQ6 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF540Q8NDQ6 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF540Q8NDQ6 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.08■□□□□ 0.97
ZNF540Q8NDQ6 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.08■□□□□ 0.97
ZNF540Q8NDQ6 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF540Q8NDQ6 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF540Q8NDQ6 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF540Q8NDQ6 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF540Q8NDQ6 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF540Q8NDQ6 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
ZNF540Q8NDQ6 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
ZNF540Q8NDQ6 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
ZNF540Q8NDQ6 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
ZNF540Q8NDQ6 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.07■□□□□ 0.96
ZNF540Q8NDQ6 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.07■□□□□ 0.96
ZNF540Q8NDQ6 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
ZNF540Q8NDQ6 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.07■□□□□ 0.96
ZNF540Q8NDQ6 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF540Q8NDQ6 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF540Q8NDQ6 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF540Q8NDQ6 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF540Q8NDQ6 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.06■□□□□ 0.96
ZNF540Q8NDQ6 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF540Q8NDQ6 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF540Q8NDQ6 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF540Q8NDQ6 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF540Q8NDQ6 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.06■□□□□ 0.96
ZNF540Q8NDQ6 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
ZNF540Q8NDQ6 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.05■□□□□ 0.96
ZNF540Q8NDQ6 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF540Q8NDQ6 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
ZNF540Q8NDQ6 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
ZNF540Q8NDQ6 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF540Q8NDQ6 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.05■□□□□ 0.96
ZNF540Q8NDQ6 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF540Q8NDQ6 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.05■□□□□ 0.96
ZNF540Q8NDQ6 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF540Q8NDQ6 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF540Q8NDQ6 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF540Q8NDQ6 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
ZNF540Q8NDQ6 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF540Q8NDQ6 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF540Q8NDQ6 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF540Q8NDQ6 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
ZNF540Q8NDQ6 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF540Q8NDQ6 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms