Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC23.65■■□□□ 1.38
NEK3P51956 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
NEK3P51956 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NEK3P51956 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.65■■□□□ 1.38
NEK3P51956 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NEK3P51956 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NEK3P51956 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NEK3P51956 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NEK3P51956 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.65■■□□□ 1.38
NEK3P51956 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC23.65■■□□□ 1.38
NEK3P51956 MIR4787-201ENST00000607364 84 ntBASIC23.65■■□□□ 1.38
NEK3P51956 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC23.65■■□□□ 1.38
NEK3P51956 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
NEK3P51956 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NEK3P51956 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
NEK3P51956 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.64■■□□□ 1.38
NEK3P51956 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
NEK3P51956 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC23.64■■□□□ 1.37
NEK3P51956 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NEK3P51956 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
NEK3P51956 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NEK3P51956 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.63■■□□□ 1.37
NEK3P51956 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NEK3P51956 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NEK3P51956 CREM-229ENST00000474362 1030 ntTSL 2 BASIC23.63■■□□□ 1.37
NEK3P51956 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.63■■□□□ 1.37
NEK3P51956 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NEK3P51956 AC141586.4-201ENST00000624558 1573 ntBASIC23.63■■□□□ 1.37
NEK3P51956 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
NEK3P51956 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NEK3P51956 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
NEK3P51956 AC012676.1-201ENST00000574705 1949 ntBASIC23.63■■□□□ 1.37
NEK3P51956 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.62■■□□□ 1.37
NEK3P51956 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NEK3P51956 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NEK3P51956 AC021242.3-201ENST00000607598 1377 ntBASIC23.62■■□□□ 1.37
NEK3P51956 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
NEK3P51956 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC23.62■■□□□ 1.37
NEK3P51956 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
NEK3P51956 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NEK3P51956 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NEK3P51956 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
NEK3P51956 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NEK3P51956 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NEK3P51956 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
NEK3P51956 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NEK3P51956 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
NEK3P51956 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
NEK3P51956 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NEK3P51956 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
NEK3P51956 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
NEK3P51956 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
NEK3P51956 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
NEK3P51956 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC23.6■■□□□ 1.37
NEK3P51956 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.6■■□□□ 1.37
NEK3P51956 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.6■■□□□ 1.37
NEK3P51956 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC23.6■■□□□ 1.37
NEK3P51956 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC23.6■■□□□ 1.37
NEK3P51956 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
NEK3P51956 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
NEK3P51956 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
NEK3P51956 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
NEK3P51956 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
NEK3P51956 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
NEK3P51956 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC23.59■■□□□ 1.37
NEK3P51956 AL356441.2-201ENST00000443009 864 ntBASIC23.59■■□□□ 1.37
NEK3P51956 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
NEK3P51956 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
NEK3P51956 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
NEK3P51956 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.59■■□□□ 1.37
NEK3P51956 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.59■■□□□ 1.37
NEK3P51956 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
NEK3P51956 AC068473.5-201ENST00000616428 2072 ntBASIC23.58■■□□□ 1.37
NEK3P51956 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
NEK3P51956 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
NEK3P51956 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
NEK3P51956 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
NEK3P51956 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
NEK3P51956 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
NEK3P51956 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NEK3P51956 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NEK3P51956 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NEK3P51956 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NEK3P51956 AC090877.2-201ENST00000558441 1738 ntBASIC23.57■■□□□ 1.36
NEK3P51956 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NEK3P51956 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NEK3P51956 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
NEK3P51956 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NEK3P51956 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NEK3P51956 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
NEK3P51956 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
NEK3P51956 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.56■■□□□ 1.36
NEK3P51956 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
NEK3P51956 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NEK3P51956 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.56■■□□□ 1.36
NEK3P51956 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NEK3P51956 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC23.56■■□□□ 1.36
NEK3P51956 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.55■■□□□ 1.36
NEK3P51956 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.55■■□□□ 1.36
NEK3P51956 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms