Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-3A6NJ46 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-3A6NJ46 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.28■□□□□ 0.68
NKX6-3A6NJ46 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.28■□□□□ 0.68
NKX6-3A6NJ46 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.28■□□□□ 0.68
NKX6-3A6NJ46 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-3A6NJ46 LINC01124-201ENST00000409786 2117 ntBASIC19.28■□□□□ 0.68
NKX6-3A6NJ46 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
NKX6-3A6NJ46 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-3A6NJ46 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-3A6NJ46 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-3A6NJ46 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX6-3A6NJ46 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX6-3A6NJ46 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX6-3A6NJ46 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX6-3A6NJ46 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.27■□□□□ 0.68
NKX6-3A6NJ46 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NKX6-3A6NJ46 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
NKX6-3A6NJ46 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.27■□□□□ 0.68
NKX6-3A6NJ46 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX6-3A6NJ46 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.27■□□□□ 0.68
NKX6-3A6NJ46 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.27■□□□□ 0.68
NKX6-3A6NJ46 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX6-3A6NJ46 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.27■□□□□ 0.68
NKX6-3A6NJ46 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.26■□□□□ 0.67
NKX6-3A6NJ46 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX6-3A6NJ46 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX6-3A6NJ46 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX6-3A6NJ46 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
NKX6-3A6NJ46 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC19.25■□□□□ 0.67
NKX6-3A6NJ46 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.25■□□□□ 0.67
NKX6-3A6NJ46 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX6-3A6NJ46 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
NKX6-3A6NJ46 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC19.25■□□□□ 0.67
NKX6-3A6NJ46 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.25■□□□□ 0.67
NKX6-3A6NJ46 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.25■□□□□ 0.67
NKX6-3A6NJ46 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.25■□□□□ 0.67
NKX6-3A6NJ46 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
NKX6-3A6NJ46 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX6-3A6NJ46 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
NKX6-3A6NJ46 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX6-3A6NJ46 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NKX6-3A6NJ46 AL035685.1-201ENST00000636663 812 ntBASIC19.24■□□□□ 0.67
NKX6-3A6NJ46 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19.24■□□□□ 0.67
NKX6-3A6NJ46 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX6-3A6NJ46 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NKX6-3A6NJ46 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NKX6-3A6NJ46 AC021242.3-201ENST00000607598 1377 ntBASIC19.23■□□□□ 0.67
NKX6-3A6NJ46 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.23■□□□□ 0.67
NKX6-3A6NJ46 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.23■□□□□ 0.67
NKX6-3A6NJ46 AC239859.2-201ENST00000444165 318 ntBASIC19.23■□□□□ 0.67
NKX6-3A6NJ46 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NKX6-3A6NJ46 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
NKX6-3A6NJ46 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NKX6-3A6NJ46 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NKX6-3A6NJ46 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
NKX6-3A6NJ46 LINC00543-201ENST00000567234 1845 ntBASIC19.23■□□□□ 0.67
NKX6-3A6NJ46 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
NKX6-3A6NJ46 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.22■□□□□ 0.67
NKX6-3A6NJ46 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
NKX6-3A6NJ46 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NKX6-3A6NJ46 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.22■□□□□ 0.67
NKX6-3A6NJ46 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.22■□□□□ 0.67
NKX6-3A6NJ46 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.22■□□□□ 0.67
NKX6-3A6NJ46 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NKX6-3A6NJ46 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NKX6-3A6NJ46 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19.21■□□□□ 0.67
NKX6-3A6NJ46 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX6-3A6NJ46 MIR4787-201ENST00000607364 84 ntBASIC19.21■□□□□ 0.67
NKX6-3A6NJ46 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
NKX6-3A6NJ46 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
NKX6-3A6NJ46 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC19.21■□□□□ 0.67
NKX6-3A6NJ46 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
NKX6-3A6NJ46 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.2■□□□□ 0.66
NKX6-3A6NJ46 AC131274.2-201ENST00000580697 1507 ntBASIC19.2■□□□□ 0.66
NKX6-3A6NJ46 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX6-3A6NJ46 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX6-3A6NJ46 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NKX6-3A6NJ46 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.2■□□□□ 0.66
NKX6-3A6NJ46 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
NKX6-3A6NJ46 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX6-3A6NJ46 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NKX6-3A6NJ46 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX6-3A6NJ46 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX6-3A6NJ46 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NKX6-3A6NJ46 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms