Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.27■■□□□ 1.32
HDDC3Q8N4P3 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
HDDC3Q8N4P3 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
HDDC3Q8N4P3 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HDDC3Q8N4P3 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HDDC3Q8N4P3 AC004448.1-201ENST00000458332 883 ntBASIC23.27■■□□□ 1.32
HDDC3Q8N4P3 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC23.27■■□□□ 1.32
HDDC3Q8N4P3 QDPR-206ENST00000508623 601 ntTSL 3 BASIC23.27■■□□□ 1.32
HDDC3Q8N4P3 AC142381.2-201ENST00000566120 298 ntBASIC23.27■■□□□ 1.32
HDDC3Q8N4P3 RARRES2P6-201ENST00000567333 442 ntBASIC23.27■■□□□ 1.32
HDDC3Q8N4P3 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC23.27■■□□□ 1.32
HDDC3Q8N4P3 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.27■■□□□ 1.32
HDDC3Q8N4P3 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
HDDC3Q8N4P3 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.26■■□□□ 1.31
HDDC3Q8N4P3 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HDDC3Q8N4P3 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HDDC3Q8N4P3 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HDDC3Q8N4P3 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC23.26■■□□□ 1.31
HDDC3Q8N4P3 PBX2P1-201ENST00000493219 1291 ntBASIC23.26■■□□□ 1.31
HDDC3Q8N4P3 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.26■■□□□ 1.31
HDDC3Q8N4P3 AL512631.2-201ENST00000604634 923 ntBASIC23.26■■□□□ 1.31
HDDC3Q8N4P3 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HDDC3Q8N4P3 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.26■■□□□ 1.31
HDDC3Q8N4P3 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
HDDC3Q8N4P3 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 RASSF1-AS1-201ENST00000629828 790 ntBASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.25■■□□□ 1.31
HDDC3Q8N4P3 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
HDDC3Q8N4P3 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
HDDC3Q8N4P3 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.24■■□□□ 1.31
HDDC3Q8N4P3 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HDDC3Q8N4P3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
HDDC3Q8N4P3 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
HDDC3Q8N4P3 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
HDDC3Q8N4P3 ZNRF2P3-201ENST00000424200 374 ntBASIC23.23■■□□□ 1.31
HDDC3Q8N4P3 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC23.23■■□□□ 1.31
HDDC3Q8N4P3 AC106739.1-201ENST00000617035 715 ntBASIC23.23■■□□□ 1.31
HDDC3Q8N4P3 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.22■■□□□ 1.31
HDDC3Q8N4P3 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
HDDC3Q8N4P3 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
HDDC3Q8N4P3 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
HDDC3Q8N4P3 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
HDDC3Q8N4P3 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
HDDC3Q8N4P3 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
HDDC3Q8N4P3 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
HDDC3Q8N4P3 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
HDDC3Q8N4P3 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
HDDC3Q8N4P3 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
HDDC3Q8N4P3 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC23.21■■□□□ 1.31
HDDC3Q8N4P3 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
HDDC3Q8N4P3 MIR6089-201ENST00000616698 64 ntBASIC23.21■■□□□ 1.31
HDDC3Q8N4P3 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
HDDC3Q8N4P3 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
HDDC3Q8N4P3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HDDC3Q8N4P3 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
HDDC3Q8N4P3 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
HDDC3Q8N4P3 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC23.2■■□□□ 1.3
HDDC3Q8N4P3 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC23.2■■□□□ 1.3
HDDC3Q8N4P3 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HDDC3Q8N4P3 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
HDDC3Q8N4P3 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
HDDC3Q8N4P3 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
HDDC3Q8N4P3 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
HDDC3Q8N4P3 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.19■■□□□ 1.3
HDDC3Q8N4P3 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
HDDC3Q8N4P3 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HDDC3Q8N4P3 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HDDC3Q8N4P3 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
HDDC3Q8N4P3 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HDDC3Q8N4P3 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
HDDC3Q8N4P3 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC23.18■■□□□ 1.3
HDDC3Q8N4P3 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HDDC3Q8N4P3 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HDDC3Q8N4P3 AC131274.2-201ENST00000580697 1507 ntBASIC23.18■■□□□ 1.3
HDDC3Q8N4P3 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
HDDC3Q8N4P3 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
HDDC3Q8N4P3 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC23.17■■□□□ 1.3
HDDC3Q8N4P3 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.17■■□□□ 1.3
HDDC3Q8N4P3 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
HDDC3Q8N4P3 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.17■■□□□ 1.3
HDDC3Q8N4P3 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
HDDC3Q8N4P3 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HDDC3Q8N4P3 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HDDC3Q8N4P3 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
HDDC3Q8N4P3 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
HDDC3Q8N4P3 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
HDDC3Q8N4P3 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms