Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
HMGCS2P54868 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC26.97■■□□□ 1.91
HMGCS2P54868 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
HMGCS2P54868 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
HMGCS2P54868 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
HMGCS2P54868 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
HMGCS2P54868 HYI-206ENST00000372434 1025 ntTSL 5 BASIC26.96■■□□□ 1.91
HMGCS2P54868 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC26.96■■□□□ 1.91
HMGCS2P54868 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC26.96■■□□□ 1.91
HMGCS2P54868 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
HMGCS2P54868 LGR4-203ENST00000480977 492 ntTSL 2 BASIC26.95■■□□□ 1.9
HMGCS2P54868 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC26.95■■□□□ 1.9
HMGCS2P54868 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
HMGCS2P54868 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC26.94■■□□□ 1.9
HMGCS2P54868 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC26.94■■□□□ 1.9
HMGCS2P54868 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
HMGCS2P54868 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
HMGCS2P54868 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
HMGCS2P54868 AC026271.2-201ENST00000428091 497 ntBASIC26.94■■□□□ 1.9
HMGCS2P54868 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC26.94■■□□□ 1.9
HMGCS2P54868 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
HMGCS2P54868 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
HMGCS2P54868 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
HMGCS2P54868 REST-206ENST00000612429 1376 ntTSL 5 BASIC26.94■■□□□ 1.9
HMGCS2P54868 REST-207ENST00000616975 1370 ntTSL 5 BASIC26.94■■□□□ 1.9
HMGCS2P54868 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
HMGCS2P54868 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
HMGCS2P54868 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
HMGCS2P54868 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC26.93■■□□□ 1.9
HMGCS2P54868 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC26.93■■□□□ 1.9
HMGCS2P54868 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC26.93■■□□□ 1.9
HMGCS2P54868 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC26.93■■□□□ 1.9
HMGCS2P54868 AC131274.2-201ENST00000580697 1507 ntBASIC26.93■■□□□ 1.9
HMGCS2P54868 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC26.92■■□□□ 1.9
HMGCS2P54868 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC26.92■■□□□ 1.9
HMGCS2P54868 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
HMGCS2P54868 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
HMGCS2P54868 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC26.92■■□□□ 1.9
HMGCS2P54868 AF213884.3-201ENST00000563833 479 ntBASIC26.92■■□□□ 1.9
HMGCS2P54868 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC26.92■■□□□ 1.9
HMGCS2P54868 GRAMD4P4-201ENST00000613563 1115 ntBASIC26.92■■□□□ 1.9
HMGCS2P54868 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
HMGCS2P54868 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
HMGCS2P54868 AL121749.1-202ENST00000609313 2153 ntBASIC26.91■■□□□ 1.9
HMGCS2P54868 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
HMGCS2P54868 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
HMGCS2P54868 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
HMGCS2P54868 AL136967.2-201ENST00000623968 743 ntBASIC26.91■■□□□ 1.9
HMGCS2P54868 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.91■■□□□ 1.9
HMGCS2P54868 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
HMGCS2P54868 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC26.9■■□□□ 1.9
HMGCS2P54868 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC26.9■■□□□ 1.9
HMGCS2P54868 AC105265.2-201ENST00000467189 838 ntBASIC26.9■■□□□ 1.9
HMGCS2P54868 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC26.9■■□□□ 1.9
HMGCS2P54868 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC26.9■■□□□ 1.9
HMGCS2P54868 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
HMGCS2P54868 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
HMGCS2P54868 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
HMGCS2P54868 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC26.89■■□□□ 1.9
HMGCS2P54868 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
HMGCS2P54868 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
HMGCS2P54868 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
HMGCS2P54868 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC26.89■■□□□ 1.9
HMGCS2P54868 DUX4L19-201ENST00000557448 1267 ntBASIC26.89■■□□□ 1.9
HMGCS2P54868 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC26.89■■□□□ 1.9
HMGCS2P54868 SLC6A10P-202ENST00000431994 2058 ntBASIC26.89■■□□□ 1.89
HMGCS2P54868 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC26.89■■□□□ 1.89
HMGCS2P54868 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
HMGCS2P54868 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
HMGCS2P54868 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
HMGCS2P54868 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC26.88■■□□□ 1.89
HMGCS2P54868 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
HMGCS2P54868 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC26.88■■□□□ 1.89
HMGCS2P54868 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC26.88■■□□□ 1.89
HMGCS2P54868 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC26.87■■□□□ 1.89
HMGCS2P54868 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
HMGCS2P54868 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
HMGCS2P54868 MIR939-201ENST00000401314 82 ntBASIC26.87■■□□□ 1.89
HMGCS2P54868 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
HMGCS2P54868 AP001330.3-201ENST00000520123 633 ntBASIC26.87■■□□□ 1.89
HMGCS2P54868 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
HMGCS2P54868 SF1-220ENST00000626028 704 ntTSL 2 BASIC26.87■■□□□ 1.89
HMGCS2P54868 SYT6-210ENST00000641643 1587 ntBASIC26.87■■□□□ 1.89
HMGCS2P54868 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
HMGCS2P54868 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.87■■□□□ 1.89
HMGCS2P54868 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
HMGCS2P54868 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
HMGCS2P54868 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
HMGCS2P54868 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
HMGCS2P54868 AC092666.2-201ENST00000613287 246 ntBASIC26.86■■□□□ 1.89
HMGCS2P54868 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
HMGCS2P54868 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
HMGCS2P54868 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
HMGCS2P54868 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC26.85■■□□□ 1.89
HMGCS2P54868 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
HMGCS2P54868 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
HMGCS2P54868 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC26.85■■□□□ 1.89
HMGCS2P54868 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
HMGCS2P54868 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
HMGCS2P54868 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms