Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
SMCHD1A6NHR9 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC26.68■■□□□ 1.86
SMCHD1A6NHR9 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
SMCHD1A6NHR9 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SMCHD1A6NHR9 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SMCHD1A6NHR9 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SMCHD1A6NHR9 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC26.67■■□□□ 1.86
SMCHD1A6NHR9 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC26.67■■□□□ 1.86
SMCHD1A6NHR9 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SMCHD1A6NHR9 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SMCHD1A6NHR9 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC26.67■■□□□ 1.86
SMCHD1A6NHR9 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
SMCHD1A6NHR9 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SMCHD1A6NHR9 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC26.67■■□□□ 1.86
SMCHD1A6NHR9 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
SMCHD1A6NHR9 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC26.67■■□□□ 1.86
SMCHD1A6NHR9 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
SMCHD1A6NHR9 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SMCHD1A6NHR9 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SMCHD1A6NHR9 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
SMCHD1A6NHR9 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SMCHD1A6NHR9 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SMCHD1A6NHR9 AK3-203ENST00000447596 705 ntTSL 2 BASIC26.65■■□□□ 1.86
SMCHD1A6NHR9 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC26.65■■□□□ 1.86
SMCHD1A6NHR9 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC26.65■■□□□ 1.86
SMCHD1A6NHR9 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC26.65■■□□□ 1.86
SMCHD1A6NHR9 MIR6089-201ENST00000616698 64 ntBASIC26.65■■□□□ 1.86
SMCHD1A6NHR9 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC26.65■■□□□ 1.86
SMCHD1A6NHR9 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SMCHD1A6NHR9 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC26.65■■□□□ 1.86
SMCHD1A6NHR9 AC005837.3-201ENST00000612163 286 ntBASIC26.65■■□□□ 1.86
SMCHD1A6NHR9 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.64■■□□□ 1.86
SMCHD1A6NHR9 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
SMCHD1A6NHR9 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC26.64■■□□□ 1.86
SMCHD1A6NHR9 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.64■■□□□ 1.85
SMCHD1A6NHR9 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC26.64■■□□□ 1.85
SMCHD1A6NHR9 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
SMCHD1A6NHR9 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SMCHD1A6NHR9 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SMCHD1A6NHR9 ZNRF2P3-201ENST00000424200 374 ntBASIC26.63■■□□□ 1.85
SMCHD1A6NHR9 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
SMCHD1A6NHR9 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SMCHD1A6NHR9 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC26.63■■□□□ 1.85
SMCHD1A6NHR9 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SMCHD1A6NHR9 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.63■■□□□ 1.85
SMCHD1A6NHR9 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC26.63■■□□□ 1.85
SMCHD1A6NHR9 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC26.63■■□□□ 1.85
SMCHD1A6NHR9 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
SMCHD1A6NHR9 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC26.62■■□□□ 1.85
SMCHD1A6NHR9 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SMCHD1A6NHR9 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
SMCHD1A6NHR9 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SMCHD1A6NHR9 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
SMCHD1A6NHR9 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SMCHD1A6NHR9 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC26.61■■□□□ 1.85
SMCHD1A6NHR9 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
SMCHD1A6NHR9 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC26.61■■□□□ 1.85
SMCHD1A6NHR9 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
SMCHD1A6NHR9 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SMCHD1A6NHR9 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC26.61■■□□□ 1.85
SMCHD1A6NHR9 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC26.61■■□□□ 1.85
SMCHD1A6NHR9 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC26.61■■□□□ 1.85
SMCHD1A6NHR9 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
SMCHD1A6NHR9 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
SMCHD1A6NHR9 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC26.6■■□□□ 1.85
SMCHD1A6NHR9 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC26.6■■□□□ 1.85
SMCHD1A6NHR9 AC133561.4-201ENST00000566112 224 ntBASIC26.6■■□□□ 1.85
SMCHD1A6NHR9 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
SMCHD1A6NHR9 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SMCHD1A6NHR9 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC26.59■■□□□ 1.85
SMCHD1A6NHR9 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SMCHD1A6NHR9 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SMCHD1A6NHR9 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC26.59■■□□□ 1.85
SMCHD1A6NHR9 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
SMCHD1A6NHR9 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SMCHD1A6NHR9 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
SMCHD1A6NHR9 LSR-205ENST00000427250 1606 ntTSL 2 BASIC26.58■■□□□ 1.85
SMCHD1A6NHR9 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SMCHD1A6NHR9 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC26.58■■□□□ 1.85
SMCHD1A6NHR9 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC26.58■■□□□ 1.85
SMCHD1A6NHR9 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC26.58■■□□□ 1.85
SMCHD1A6NHR9 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
SMCHD1A6NHR9 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC26.58■■□□□ 1.85
SMCHD1A6NHR9 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC26.58■■□□□ 1.85
SMCHD1A6NHR9 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC26.58■■□□□ 1.85
SMCHD1A6NHR9 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.58■■□□□ 1.84
SMCHD1A6NHR9 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
SMCHD1A6NHR9 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
SMCHD1A6NHR9 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
SMCHD1A6NHR9 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
SMCHD1A6NHR9 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
SMCHD1A6NHR9 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
SMCHD1A6NHR9 AC022211.4-201ENST00000625094 2161 ntBASIC26.56■■□□□ 1.84
SMCHD1A6NHR9 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC26.56■■□□□ 1.84
SMCHD1A6NHR9 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
SMCHD1A6NHR9 AC106739.1-201ENST00000617035 715 ntBASIC26.56■■□□□ 1.84
SMCHD1A6NHR9 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC26.56■■□□□ 1.84
SMCHD1A6NHR9 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SMCHD1A6NHR9 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SMCHD1A6NHR9 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC26.55■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms