Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC27.11■■□□□ 1.93
HMGCS2P54868 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC27.11■■□□□ 1.93
HMGCS2P54868 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC27.11■■□□□ 1.93
HMGCS2P54868 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
HMGCS2P54868 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
HMGCS2P54868 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
HMGCS2P54868 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
HMGCS2P54868 AC004448.1-201ENST00000458332 883 ntBASIC27.1■■□□□ 1.93
HMGCS2P54868 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
HMGCS2P54868 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
HMGCS2P54868 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
HMGCS2P54868 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC27.09■■□□□ 1.93
HMGCS2P54868 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
HMGCS2P54868 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC27.09■■□□□ 1.93
HMGCS2P54868 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC27.09■■□□□ 1.93
HMGCS2P54868 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC27.09■■□□□ 1.93
HMGCS2P54868 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
HMGCS2P54868 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
HMGCS2P54868 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
HMGCS2P54868 AC135279.3-201ENST00000610945 1311 ntBASIC27.09■■□□□ 1.93
HMGCS2P54868 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
HMGCS2P54868 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC27.08■■□□□ 1.93
HMGCS2P54868 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
HMGCS2P54868 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
HMGCS2P54868 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
HMGCS2P54868 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
HMGCS2P54868 SUDS3P1-201ENST00000505831 966 ntBASIC27.07■■□□□ 1.92
HMGCS2P54868 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC27.07■■□□□ 1.92
HMGCS2P54868 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
HMGCS2P54868 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC27.06■■□□□ 1.92
HMGCS2P54868 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
HMGCS2P54868 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
HMGCS2P54868 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC27.06■■□□□ 1.92
HMGCS2P54868 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC27.06■■□□□ 1.92
HMGCS2P54868 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
HMGCS2P54868 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC27.06■■□□□ 1.92
HMGCS2P54868 AC024257.2-201ENST00000549699 147 ntBASIC27.06■■□□□ 1.92
HMGCS2P54868 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC27.06■■□□□ 1.92
HMGCS2P54868 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC27.06■■□□□ 1.92
HMGCS2P54868 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
HMGCS2P54868 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
HMGCS2P54868 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
HMGCS2P54868 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC27.06■■□□□ 1.92
HMGCS2P54868 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
HMGCS2P54868 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
HMGCS2P54868 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
HMGCS2P54868 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC27.05■■□□□ 1.92
HMGCS2P54868 GATM-206ENST00000558336 1522 ntTSL 2 BASIC27.05■■□□□ 1.92
HMGCS2P54868 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC27.04■■□□□ 1.92
HMGCS2P54868 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
HMGCS2P54868 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
HMGCS2P54868 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
HMGCS2P54868 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC27.03■■□□□ 1.92
HMGCS2P54868 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
HMGCS2P54868 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC27.03■■□□□ 1.92
HMGCS2P54868 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC27.03■■□□□ 1.92
HMGCS2P54868 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC27.03■■□□□ 1.92
HMGCS2P54868 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
HMGCS2P54868 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC27.03■■□□□ 1.92
HMGCS2P54868 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC27.03■■□□□ 1.92
HMGCS2P54868 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
HMGCS2P54868 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
HMGCS2P54868 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
HMGCS2P54868 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
HMGCS2P54868 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
HMGCS2P54868 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
HMGCS2P54868 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
HMGCS2P54868 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC27.02■■□□□ 1.92
HMGCS2P54868 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC27.02■■□□□ 1.92
HMGCS2P54868 RARRES2P6-201ENST00000567333 442 ntBASIC27.02■■□□□ 1.92
HMGCS2P54868 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
HMGCS2P54868 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
HMGCS2P54868 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
HMGCS2P54868 AC005703.6-201ENST00000623265 1329 ntBASIC27.01■■□□□ 1.91
HMGCS2P54868 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
HMGCS2P54868 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
HMGCS2P54868 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC27■■□□□ 1.91
HMGCS2P54868 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC27■■□□□ 1.91
HMGCS2P54868 AC092803.2-201ENST00000564287 1899 ntBASIC27■■□□□ 1.91
HMGCS2P54868 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
HMGCS2P54868 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
HMGCS2P54868 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
HMGCS2P54868 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC27■■□□□ 1.91
HMGCS2P54868 EDA-201ENST00000338901 1233 ntBASIC27■■□□□ 1.91
HMGCS2P54868 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC27■■□□□ 1.91
HMGCS2P54868 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC27■■□□□ 1.91
HMGCS2P54868 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC27■■□□□ 1.91
HMGCS2P54868 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC26.99■■□□□ 1.91
HMGCS2P54868 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC26.99■■□□□ 1.91
HMGCS2P54868 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC26.99■■□□□ 1.91
HMGCS2P54868 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
HMGCS2P54868 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
HMGCS2P54868 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC26.98■■□□□ 1.91
HMGCS2P54868 AL355001.2-201ENST00000620617 1191 ntBASIC26.98■■□□□ 1.91
HMGCS2P54868 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC26.98■■□□□ 1.91
HMGCS2P54868 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
HMGCS2P54868 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC26.98■■□□□ 1.91
HMGCS2P54868 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC26.97■■□□□ 1.91
HMGCS2P54868 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
HMGCS2P54868 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC26.97■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms