Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 FGFR1-219ENST00000475621 485 ntTSL 211.85□□□□□ -0.513e-8■□□□□ 8.8
LIN28BQ6ZN17 FGFR1-240ENST00000533668 571 ntTSL 59.41□□□□□ -0.93e-8■□□□□ 8.8
LIN28BQ6ZN17 FGFR1-235ENST00000530701 276 ntTSL 1 (best)1.8□□□□□ -2.123e-8■□□□□ 8.8
LIN28BQ6ZN17 HNRNPA1-210ENST00000550994 569 ntTSL 48.48□□□□□ -1.051e-9■□□□□ 8.8
LIN28BQ6ZN17 GAK-223ENST00000628912 497 ntTSL 5 BASIC25.88■■□□□ 1.731e-6■□□□□ 8.8
LIN28BQ6ZN17 GAK-209ENST00000507580 468 ntTSL 424.02■■□□□ 1.441e-6■□□□□ 8.8
LIN28BQ6ZN17 GAK-219ENST00000512325 577 ntTSL 324.02■■□□□ 1.441e-6■□□□□ 8.8
LIN28BQ6ZN17 GAK-207ENST00000505819 1326 ntTSL 523.18■■□□□ 1.31e-6■□□□□ 8.8
LIN28BQ6ZN17 GAK-202ENST00000502656 554 ntTSL 421.84■■□□□ 1.091e-6■□□□□ 8.8
LIN28BQ6ZN17 MRPL2-205ENST00000480286 661 ntTSL 216.41■□□□□ 0.221e-6■□□□□ 8.8
LIN28BQ6ZN17 MRPL2-209ENST00000491898 1020 ntTSL 216.36■□□□□ 0.211e-6■□□□□ 8.8
LIN28BQ6ZN17 JUP-210ENST00000585793 598 ntTSL 215.4■□□□□ 0.061e-6■□□□□ 8.8
LIN28BQ6ZN17 MRPL2-204ENST00000470667 765 ntTSL 513.46□□□□□ -0.251e-6■□□□□ 8.8
LIN28BQ6ZN17 JUP-201ENST00000310706 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.571e-6■□□□□ 8.8
LIN28BQ6ZN17 JUP-202ENST00000393930 3298 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.581e-6■□□□□ 8.8
LIN28BQ6ZN17 JUP-203ENST00000393931 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.641e-6■□□□□ 8.8
LIN28BQ6ZN17 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.195e-10■□□□□ 8.8
LIN28BQ6ZN17 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.22e-8■□□□□ 8.8
LIN28BQ6ZN17 DNAJC5-202ENST00000470551 5287 ntTSL 213.67□□□□□ -0.222e-8■□□□□ 8.8
LIN28BQ6ZN17 RPS6KA3-205ENST00000479809 847 ntTSL 55.55□□□□□ -1.526e-11■□□□□ 8.8
LIN28BQ6ZN17 MARS-226ENST00000551892 748 ntTSL 323.55■■□□□ 1.363e-8■□□□□ 8.7
LIN28BQ6ZN17 MARS-217ENST00000549074 532 ntTSL 421.85■■□□□ 1.093e-8■□□□□ 8.7
LIN28BQ6ZN17 MARS-223ENST00000551431 559 ntTSL 421.85■■□□□ 1.093e-8■□□□□ 8.7
LIN28BQ6ZN17 MARS-202ENST00000447721 1328 ntTSL 221.28■■□□□ 13e-8■□□□□ 8.7
LIN28BQ6ZN17 MARS-213ENST00000548674 749 ntTSL 517.72■□□□□ 0.433e-8■□□□□ 8.7
LIN28BQ6ZN17 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.18■□□□□ 0.023e-8■□□□□ 8.7
LIN28BQ6ZN17 MARS-204ENST00000545888 2979 ntTSL 513.95□□□□□ -0.183e-8■□□□□ 8.7
LIN28BQ6ZN17 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.243e-8■□□□□ 8.7
LIN28BQ6ZN17 MARS-203ENST00000537638 3592 ntTSL 212.81□□□□□ -0.363e-8■□□□□ 8.7
LIN28BQ6ZN17 MARS-228ENST00000552371 699 ntTSL 312.69□□□□□ -0.383e-8■□□□□ 8.7
LIN28BQ6ZN17 NONO-211ENST00000473525 1430 ntTSL 510.84□□□□□ -0.673e-8■□□□□ 8.7
LIN28BQ6ZN17 TCP1-218ENST00000546204 566 ntTSL 28.95□□□□□ -0.983e-8■□□□□ 8.7
LIN28BQ6ZN17 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.053e-8■□□□□ 8.7
LIN28BQ6ZN17 ELOVL5-207ENST00000542638 2875 ntTSL 1 (best) BASIC8.37□□□□□ -1.073e-8■□□□□ 8.7
LIN28BQ6ZN17 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.21□□□□□ -1.423e-8■□□□□ 8.7
LIN28BQ6ZN17 PSMA5-202ENST00000477897 275 ntTSL 22.56□□□□□ -24e-8■□□□□ 8.7
LIN28BQ6ZN17 FIS1-209ENST00000482199 731 ntTSL 319.53■□□□□ 0.722e-8■□□□□ 8.7
LIN28BQ6ZN17 FIS1-205ENST00000463406 527 ntTSL 310.56□□□□□ -0.722e-8■□□□□ 8.7
LIN28BQ6ZN17 DHRS3-203ENST00000482265 1036 ntTSL 316.85■□□□□ 0.296e-6■□□□□ 8.7
LIN28BQ6ZN17 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.071e-7■□□□□ 8.7
LIN28BQ6ZN17 EFCAB14-204ENST00000481623 614 ntTSL 28.35□□□□□ -1.071e-7■□□□□ 8.7
LIN28BQ6ZN17 EFCAB14-203ENST00000479745 804 ntTSL 24.14□□□□□ -1.751e-7■□□□□ 8.7
LIN28BQ6ZN17 EFCAB14-206ENST00000487741 784 ntTSL 33.1□□□□□ -1.911e-7■□□□□ 8.7
LIN28BQ6ZN17 CYC1-204ENST00000533444 1832 ntTSL 1 (best)27.17■■□□□ 1.941e-15■□□□□ 8.7
LIN28BQ6ZN17 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.591e-15■□□□□ 8.7
LIN28BQ6ZN17 CYC1-203ENST00000528618 831 ntTSL 520.51■□□□□ 0.871e-15■□□□□ 8.7
LIN28BQ6ZN17 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.84■□□□□ 0.292e-6■□□□□ 8.7
LIN28BQ6ZN17 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.082e-6■□□□□ 8.7
LIN28BQ6ZN17 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.022e-6■□□□□ 8.7
LIN28BQ6ZN17 DNTTIP2-203ENST00000460191 3084 ntTSL 214.9□□□□□ -0.022e-6■□□□□ 8.7
LIN28BQ6ZN17 DNTTIP2-206ENST00000496672 811 ntTSL 1 (best)10.03□□□□□ -0.82e-6■□□□□ 8.7
LIN28BQ6ZN17 DNTTIP2-207ENST00000528680 499 ntTSL 39.27□□□□□ -0.932e-6■□□□□ 8.7
LIN28BQ6ZN17 DNTTIP2-201ENST00000359208 2199 ntTSL 28.14□□□□□ -1.112e-6■□□□□ 8.7
LIN28BQ6ZN17 CBX3-206ENST00000481057 860 ntTSL 27.36□□□□□ -1.232e-6■□□□□ 8.7
LIN28BQ6ZN17 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.552e-6■□□□□ 8.7
LIN28BQ6ZN17 RPS6-202ENST00000380381 892 ntTSL 2 BASIC10.55□□□□□ -0.721e-23■□□□□ 8.7
LIN28BQ6ZN17 FGFR4-206ENST00000483872 663 ntTSL 313.01□□□□□ -0.339e-20■□□□□ 8.7
LIN28BQ6ZN17 RBM39-230ENST00000476806 754 ntTSL 58.01□□□□□ -1.132e-8■□□□□ 8.7
LIN28BQ6ZN17 RBM39-225ENST00000465158 825 ntTSL 27.05□□□□□ -1.282e-8■□□□□ 8.7
LIN28BQ6ZN17 RBM39-233ENST00000482563 1737 ntTSL 26.05□□□□□ -1.442e-8■□□□□ 8.7
LIN28BQ6ZN17 RBM39-227ENST00000470563 384 ntTSL 34.91□□□□□ -1.622e-8■□□□□ 8.7
LIN28BQ6ZN17 RBM39-240ENST00000495293 759 ntTSL 24.89□□□□□ -1.632e-8■□□□□ 8.7
LIN28BQ6ZN17 RBM39-241ENST00000496183 632 ntTSL 24.77□□□□□ -1.652e-8■□□□□ 8.7
LIN28BQ6ZN17 RBM39-235ENST00000490354 436 ntTSL 24.73□□□□□ -1.652e-8■□□□□ 8.7
LIN28BQ6ZN17 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.547e-7■□□□□ 8.7
LIN28BQ6ZN17 RHOA-204ENST00000431929 539 ntTSL 422.9■■□□□ 1.265e-9■□□□□ 8.7
LIN28BQ6ZN17 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.272e-9■□□□□ 8.7
LIN28BQ6ZN17 CCL20-203ENST00000473642 680 ntTSL 26.52□□□□□ -1.372e-9■□□□□ 8.7
LIN28BQ6ZN17 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.512e-9■□□□□ 8.7
LIN28BQ6ZN17 FARP1-213ENST00000595380 616 ntTSL 511.98□□□□□ -0.491e-6■□□□□ 8.7
LIN28BQ6ZN17 FARP1-232ENST00000601009 667 ntTSL 510.47□□□□□ -0.731e-6■□□□□ 8.7
LIN28BQ6ZN17 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.214e-6■□□□□ 8.7
LIN28BQ6ZN17 HDLBP-238ENST00000479894 840 ntTSL 518.22■□□□□ 0.514e-15■□□□□ 8.7
LIN28BQ6ZN17 MLEC-203ENST00000535413 617 ntTSL 211.6□□□□□ -0.554e-6■□□□□ 8.7
LIN28BQ6ZN17 ATP11A-208ENST00000459908 4516 ntTSL 211.04□□□□□ -0.645e-8■□□□□ 8.7
LIN28BQ6ZN17 CDS2-201ENST00000379070 2713 ntTSL 29.19□□□□□ -0.945e-8■□□□□ 8.7
LIN28BQ6ZN17 GNPTAB-209ENST00000552009 601 ntTSL 37.93□□□□□ -1.144e-6■□□□□ 8.7
LIN28BQ6ZN17 ATP11A-204ENST00000418678 3163 ntAPPRIS ALT2 TSL 1 (best)7.67□□□□□ -1.185e-8■□□□□ 8.7
LIN28BQ6ZN17 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.03□□□□□ -1.444e-6■□□□□ 8.7
LIN28BQ6ZN17 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.684e-6■□□□□ 8.7
LIN28BQ6ZN17 IPO5-209ENST00000470493 548 ntTSL 24.22□□□□□ -1.734e-8■□□□□ 8.7
LIN28BQ6ZN17 ALAS2-208ENST00000498636 959 ntTSL 314.01□□□□□ -0.174e-6■□□□□ 8.7
LIN28BQ6ZN17 KPNB1-206ENST00000578718 550 ntTSL 33.56□□□□□ -1.842e-16■□□□□ 8.6
LIN28BQ6ZN17 TPT1-202ENST00000379055 948 ntTSL 2 BASIC28.46■■■□□ 2.152e-13■□□□□ 8.6
LIN28BQ6ZN17 TPT1-201ENST00000309246 1008 ntTSL 1 (best) BASIC14.09□□□□□ -0.152e-13■□□□□ 8.6
LIN28BQ6ZN17 TPT1-203ENST00000379056 1101 ntTSL 1 (best) BASIC13.95□□□□□ -0.182e-13■□□□□ 8.6
LIN28BQ6ZN17 TPT1-212ENST00000530705 4735 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.52e-13■□□□□ 8.6
LIN28BQ6ZN17 TPT1-207ENST00000490277 1851 ntTSL 210.13□□□□□ -0.792e-13■□□□□ 8.6
LIN28BQ6ZN17 TPT1-214ENST00000616577 4814 ntTSL 3 BASIC9.94□□□□□ -0.822e-13■□□□□ 8.6
LIN28BQ6ZN17 TPT1-206ENST00000484604 794 ntTSL 28.62□□□□□ -1.032e-13■□□□□ 8.6
LIN28BQ6ZN17 TPT1-210ENST00000529421 801 ntTSL 36.45□□□□□ -1.382e-13■□□□□ 8.6
LIN28BQ6ZN17 TPT1-204ENST00000379060 764 ntTSL 5 BASIC6.43□□□□□ -1.382e-13■□□□□ 8.6
LIN28BQ6ZN17 TPT1-209ENST00000528619 731 ntTSL 25.98□□□□□ -1.452e-13■□□□□ 8.6
LIN28BQ6ZN17 TPT1-211ENST00000530245 530 ntTSL 35.44□□□□□ -1.542e-13■□□□□ 8.6
LIN28BQ6ZN17 TPT1-213ENST00000533567 594 ntTSL 33.44□□□□□ -1.862e-13■□□□□ 8.6
LIN28BQ6ZN17 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.8□□□□□ -1.488e-8■□□□□ 8.6
LIN28BQ6ZN17 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.622e-6■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-223ENST00000589266 616 ntTSL 327.3■■□□□ 1.962e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-231ENST00000591097 1507 ntTSL 1 (best)25.99■■□□□ 1.752e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.89■■□□□ 1.732e-8■□□□□ 8.6
Retrieved 100 of 21,972 protein–RNA pairs in 67.7 ms