Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
VRK3Q8IV63 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC22.92■■□□□ 1.26
VRK3Q8IV63 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22.92■■□□□ 1.26
VRK3Q8IV63 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
VRK3Q8IV63 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
VRK3Q8IV63 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC22.92■■□□□ 1.26
VRK3Q8IV63 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
VRK3Q8IV63 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.92■■□□□ 1.26
VRK3Q8IV63 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.92■■□□□ 1.26
VRK3Q8IV63 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
VRK3Q8IV63 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
VRK3Q8IV63 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
VRK3Q8IV63 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
VRK3Q8IV63 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.91■■□□□ 1.26
VRK3Q8IV63 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.91■■□□□ 1.26
VRK3Q8IV63 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
VRK3Q8IV63 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.91■■□□□ 1.26
VRK3Q8IV63 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.91■■□□□ 1.26
VRK3Q8IV63 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
VRK3Q8IV63 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.9■■□□□ 1.26
VRK3Q8IV63 AC120024.1-201ENST00000562672 995 ntBASIC22.9■■□□□ 1.26
VRK3Q8IV63 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.9■■□□□ 1.26
VRK3Q8IV63 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.9■■□□□ 1.26
VRK3Q8IV63 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
VRK3Q8IV63 AL139125.2-201ENST00000623134 1869 ntBASIC22.9■■□□□ 1.26
VRK3Q8IV63 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC22.89■■□□□ 1.25
VRK3Q8IV63 AC103724.3-201ENST00000564481 992 ntBASIC22.89■■□□□ 1.25
VRK3Q8IV63 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
VRK3Q8IV63 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
VRK3Q8IV63 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
VRK3Q8IV63 YBX1P4-201ENST00000392794 808 ntBASIC22.88■■□□□ 1.25
VRK3Q8IV63 RARRES2P1-201ENST00000474487 481 ntBASIC22.88■■□□□ 1.25
VRK3Q8IV63 AC135731.1-201ENST00000569415 2548 ntBASIC22.88■■□□□ 1.25
VRK3Q8IV63 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
VRK3Q8IV63 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
VRK3Q8IV63 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
VRK3Q8IV63 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC22.87■■□□□ 1.25
VRK3Q8IV63 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
VRK3Q8IV63 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
VRK3Q8IV63 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
VRK3Q8IV63 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
VRK3Q8IV63 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC22.86■■□□□ 1.25
VRK3Q8IV63 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
VRK3Q8IV63 HLA-L-211ENST00000482052 1765 ntBASIC22.86■■□□□ 1.25
VRK3Q8IV63 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.86■■□□□ 1.25
VRK3Q8IV63 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.86■■□□□ 1.25
VRK3Q8IV63 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC22.86■■□□□ 1.25
VRK3Q8IV63 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
VRK3Q8IV63 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
VRK3Q8IV63 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
VRK3Q8IV63 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC22.86■■□□□ 1.25
VRK3Q8IV63 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22.86■■□□□ 1.25
VRK3Q8IV63 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
VRK3Q8IV63 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
VRK3Q8IV63 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.85■■□□□ 1.25
VRK3Q8IV63 KRT18P24-201ENST00000344739 1156 ntBASIC22.85■■□□□ 1.25
VRK3Q8IV63 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
VRK3Q8IV63 AC011551.1-201ENST00000614101 683 ntBASIC22.85■■□□□ 1.25
VRK3Q8IV63 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
VRK3Q8IV63 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.84■■□□□ 1.25
VRK3Q8IV63 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
VRK3Q8IV63 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.84■■□□□ 1.25
VRK3Q8IV63 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC22.84■■□□□ 1.25
VRK3Q8IV63 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
VRK3Q8IV63 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
VRK3Q8IV63 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
VRK3Q8IV63 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.84■■□□□ 1.25
VRK3Q8IV63 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.83■■□□□ 1.25
VRK3Q8IV63 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
VRK3Q8IV63 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.25
VRK3Q8IV63 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC22.83■■□□□ 1.25
VRK3Q8IV63 THA1P-201ENST00000590384 1145 ntBASIC22.83■■□□□ 1.25
VRK3Q8IV63 GAK-223ENST00000628912 497 ntTSL 5 BASIC22.83■■□□□ 1.25
VRK3Q8IV63 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC22.83■■□□□ 1.25
VRK3Q8IV63 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
VRK3Q8IV63 PREB-202ENST00000406567 1910 ntTSL 5 BASIC22.82■■□□□ 1.24
VRK3Q8IV63 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
VRK3Q8IV63 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
VRK3Q8IV63 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
VRK3Q8IV63 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
VRK3Q8IV63 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
VRK3Q8IV63 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
VRK3Q8IV63 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
VRK3Q8IV63 LINC01124-201ENST00000409786 2117 ntBASIC22.81■■□□□ 1.24
VRK3Q8IV63 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC22.8■■□□□ 1.24
VRK3Q8IV63 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.8■■□□□ 1.24
VRK3Q8IV63 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
VRK3Q8IV63 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC22.8■■□□□ 1.24
VRK3Q8IV63 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
VRK3Q8IV63 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC22.8■■□□□ 1.24
VRK3Q8IV63 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
VRK3Q8IV63 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
VRK3Q8IV63 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
VRK3Q8IV63 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC22.79■■□□□ 1.24
VRK3Q8IV63 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
VRK3Q8IV63 MIR4281-201ENST00000580852 62 ntBASIC22.79■■□□□ 1.24
VRK3Q8IV63 AL031848.2-201ENST00000607670 837 ntBASIC22.79■■□□□ 1.24
VRK3Q8IV63 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
VRK3Q8IV63 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
VRK3Q8IV63 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC22.78■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms