Protein–RNA interactions for Protein: Q86UE6

LRRTM1, Leucine-rich repeat transmembrane neuronal protein 1, humanhuman

Predictions only

Length 522 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRTM1Q86UE6 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRRTM1Q86UE6 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LRRTM1Q86UE6 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LRRTM1Q86UE6 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LRRTM1Q86UE6 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRRTM1Q86UE6 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRRTM1Q86UE6 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
LRRTM1Q86UE6 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRRTM1Q86UE6 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LRRTM1Q86UE6 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.23■□□□□ 0.83
LRRTM1Q86UE6 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.23■□□□□ 0.83
LRRTM1Q86UE6 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRRTM1Q86UE6 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LRRTM1Q86UE6 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
LRRTM1Q86UE6 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LRRTM1Q86UE6 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRRTM1Q86UE6 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.22■□□□□ 0.83
LRRTM1Q86UE6 C9orf163-202ENST00000624034 2573 ntBASIC20.22■□□□□ 0.83
LRRTM1Q86UE6 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRRTM1Q86UE6 MIR3648-2-201ENST00000581792 180 ntBASIC20.22■□□□□ 0.83
LRRTM1Q86UE6 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LRRTM1Q86UE6 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRRTM1Q86UE6 MIR3648-1-201ENST00000615959 180 ntBASIC20.22■□□□□ 0.83
LRRTM1Q86UE6 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LRRTM1Q86UE6 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRRTM1Q86UE6 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRRTM1Q86UE6 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
LRRTM1Q86UE6 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRRTM1Q86UE6 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
LRRTM1Q86UE6 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRRTM1Q86UE6 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRRTM1Q86UE6 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRRTM1Q86UE6 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRRTM1Q86UE6 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LRRTM1Q86UE6 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LRRTM1Q86UE6 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LRRTM1Q86UE6 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LRRTM1Q86UE6 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LRRTM1Q86UE6 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
LRRTM1Q86UE6 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LRRTM1Q86UE6 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.2■□□□□ 0.82
LRRTM1Q86UE6 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.2■□□□□ 0.82
LRRTM1Q86UE6 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LRRTM1Q86UE6 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.2■□□□□ 0.82
LRRTM1Q86UE6 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.2■□□□□ 0.82
LRRTM1Q86UE6 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LRRTM1Q86UE6 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.19■□□□□ 0.82
LRRTM1Q86UE6 SMPD5-203ENST00000639008 1464 ntBASIC20.19■□□□□ 0.82
LRRTM1Q86UE6 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LRRTM1Q86UE6 AC060814.1-201ENST00000554326 538 ntBASIC20.19■□□□□ 0.82
LRRTM1Q86UE6 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LRRTM1Q86UE6 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LRRTM1Q86UE6 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LRRTM1Q86UE6 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
LRRTM1Q86UE6 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.18■□□□□ 0.82
LRRTM1Q86UE6 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LRRTM1Q86UE6 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LRRTM1Q86UE6 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LRRTM1Q86UE6 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LRRTM1Q86UE6 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.18■□□□□ 0.82
LRRTM1Q86UE6 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.18■□□□□ 0.82
LRRTM1Q86UE6 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.18■□□□□ 0.82
LRRTM1Q86UE6 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
LRRTM1Q86UE6 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
LRRTM1Q86UE6 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LRRTM1Q86UE6 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LRRTM1Q86UE6 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LRRTM1Q86UE6 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.17■□□□□ 0.82
LRRTM1Q86UE6 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.17■□□□□ 0.82
LRRTM1Q86UE6 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.17■□□□□ 0.82
LRRTM1Q86UE6 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LRRTM1Q86UE6 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LRRTM1Q86UE6 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.17■□□□□ 0.82
LRRTM1Q86UE6 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.17■□□□□ 0.82
LRRTM1Q86UE6 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.16■□□□□ 0.82
LRRTM1Q86UE6 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRTM1Q86UE6 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRTM1Q86UE6 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
LRRTM1Q86UE6 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LRRTM1Q86UE6 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRTM1Q86UE6 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.16■□□□□ 0.82
LRRTM1Q86UE6 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRTM1Q86UE6 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
LRRTM1Q86UE6 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LRRTM1Q86UE6 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.14■□□□□ 0.81
LRRTM1Q86UE6 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms