Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC31.45■■■□□ 2.63
RXRBP28702 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC31.45■■■□□ 2.63
RXRBP28702 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC31.45■■■□□ 2.63
RXRBP28702 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
RXRBP28702 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
RXRBP28702 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
RXRBP28702 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
RXRBP28702 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
RXRBP28702 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
RXRBP28702 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC31.44■■■□□ 2.62
RXRBP28702 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
RXRBP28702 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
RXRBP28702 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
RXRBP28702 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
RXRBP28702 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
RXRBP28702 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC31.43■■■□□ 2.62
RXRBP28702 AC011298.3-201ENST00000615796 283 ntBASIC31.43■■■□□ 2.62
RXRBP28702 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
RXRBP28702 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC31.42■■■□□ 2.62
RXRBP28702 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC31.41■■■□□ 2.62
RXRBP28702 GXYLT1P2-201ENST00000433312 1230 ntBASIC31.41■■■□□ 2.62
RXRBP28702 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC31.41■■■□□ 2.62
RXRBP28702 TK2-208ENST00000545043 1120 ntTSL 2 BASIC31.41■■■□□ 2.62
RXRBP28702 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
RXRBP28702 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
RXRBP28702 PTCHD3P2-201ENST00000424937 1205 ntBASIC31.4■■■□□ 2.62
RXRBP28702 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC31.4■■■□□ 2.62
RXRBP28702 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC31.4■■■□□ 2.62
RXRBP28702 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC31.4■■■□□ 2.62
RXRBP28702 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
RXRBP28702 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
RXRBP28702 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC31.39■■■□□ 2.62
RXRBP28702 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC31.39■■■□□ 2.62
RXRBP28702 RAB43-208ENST00000615093 783 ntTSL 5 BASIC31.39■■■□□ 2.62
RXRBP28702 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
RXRBP28702 EMC9-206ENST00000560403 872 ntTSL 2 BASIC31.38■■■□□ 2.61
RXRBP28702 AL138724.1-201ENST00000606771 1088 ntBASIC31.38■■■□□ 2.61
RXRBP28702 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC31.38■■■□□ 2.61
RXRBP28702 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC31.38■■■□□ 2.61
RXRBP28702 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
RXRBP28702 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC31.37■■■□□ 2.61
RXRBP28702 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC31.37■■■□□ 2.61
RXRBP28702 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
RXRBP28702 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
RXRBP28702 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC31.37■■■□□ 2.61
RXRBP28702 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
RXRBP28702 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC31.36■■■□□ 2.61
RXRBP28702 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC31.36■■■□□ 2.61
RXRBP28702 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC31.36■■■□□ 2.61
RXRBP28702 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
RXRBP28702 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
RXRBP28702 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC31.36■■■□□ 2.61
RXRBP28702 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC31.36■■■□□ 2.61
RXRBP28702 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC31.36■■■□□ 2.61
RXRBP28702 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
RXRBP28702 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
RXRBP28702 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
RXRBP28702 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
RXRBP28702 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC31.34■■■□□ 2.61
RXRBP28702 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC31.34■■■□□ 2.61
RXRBP28702 MPST-208ENST00000628507 698 ntTSL 5 BASIC31.34■■■□□ 2.61
RXRBP28702 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
RXRBP28702 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
RXRBP28702 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
RXRBP28702 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC31.33■■■□□ 2.61
RXRBP28702 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
RXRBP28702 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.61
RXRBP28702 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC31.32■■■□□ 2.61
RXRBP28702 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.32■■■□□ 2.6
RXRBP28702 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC31.32■■■□□ 2.6
RXRBP28702 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC31.32■■■□□ 2.6
RXRBP28702 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC31.32■■■□□ 2.6
RXRBP28702 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
RXRBP28702 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
RXRBP28702 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
RXRBP28702 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
RXRBP28702 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
RXRBP28702 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC31.3■■■□□ 2.6
RXRBP28702 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RXRBP28702 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RXRBP28702 GRAMD4P2-201ENST00000423297 1097 ntBASIC31.3■■■□□ 2.6
RXRBP28702 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC31.3■■■□□ 2.6
RXRBP28702 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC31.3■■■□□ 2.6
RXRBP28702 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC31.29■■■□□ 2.6
RXRBP28702 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RXRBP28702 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC31.29■■■□□ 2.6
RXRBP28702 AC233992.3-201ENST00000607491 485 ntBASIC31.29■■■□□ 2.6
RXRBP28702 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC31.29■■■□□ 2.6
RXRBP28702 AC099791.2-201ENST00000605725 427 ntBASIC31.28■■■□□ 2.6
RXRBP28702 AL139393.2-201ENST00000608721 2025 ntBASIC31.28■■■□□ 2.6
RXRBP28702 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
RXRBP28702 GXYLT1P5-201ENST00000614548 1189 ntBASIC31.28■■■□□ 2.6
RXRBP28702 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC31.28■■■□□ 2.6
RXRBP28702 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
RXRBP28702 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RXRBP28702 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
RXRBP28702 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC31.27■■■□□ 2.6
RXRBP28702 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC31.26■■■□□ 2.59
RXRBP28702 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC31.26■■■□□ 2.59
RXRBP28702 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC31.26■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms