Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 MVD-203ENST00000562651 908 ntTSL 218.2■□□□□ 0.54e-13■■■■□ 25
SMNDC1O75940 NELFA-212ENST00000463820 2495 ntTSL 217.77■□□□□ 0.444e-7■■■■□ 25
SMNDC1O75940 NELFA-201ENST00000333877 2228 ntTSL 217.71■□□□□ 0.434e-7■■■■□ 25
SMNDC1O75940 MVD-213ENST00000566636 863 ntTSL 317.66■□□□□ 0.424e-13■■■■□ 25
SMNDC1O75940 NELFA-205ENST00000416258 2188 ntTSL 517.59■□□□□ 0.414e-7■■■■□ 25
SMNDC1O75940 MVD-208ENST00000563785 888 ntTSL 216.98■□□□□ 0.314e-13■■■■□ 25
SMNDC1O75940 NELFA-210ENST00000455762 1022 ntTSL 516.76■□□□□ 0.274e-7■■■■□ 25
SMNDC1O75940 MVD-216ENST00000568709 809 ntTSL 516.72■□□□□ 0.274e-13■■■■□ 25
SMNDC1O75940 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.164e-7■■■■□ 25
SMNDC1O75940 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.91■□□□□ 0.144e-7■■■■□ 25
SMNDC1O75940 MVD-206ENST00000563170 904 ntTSL 314.68□□□□□ -0.064e-13■■■■□ 25
SMNDC1O75940 NELFA-209ENST00000453740 738 ntTSL 314.31□□□□□ -0.124e-7■■■■□ 25
SMNDC1O75940 NELFA-207ENST00000431323 888 ntTSL 513.73□□□□□ -0.214e-7■■■■□ 25
SMNDC1O75940 NELFA-215ENST00000488452 560 ntTSL 413.73□□□□□ -0.214e-7■■■■□ 25
SMNDC1O75940 NELFA-206ENST00000421397 574 ntTSL 513.17□□□□□ -0.34e-7■■■■□ 25
SMNDC1O75940 ACAP3-210ENST00000478065 2393 ntTSL 320.51■□□□□ 0.871e-6■■■■□ 25
SMNDC1O75940 ACAP3-212ENST00000492936 5319 ntTSL 1 (best)18.05■□□□□ 0.481e-6■■■■□ 25
SMNDC1O75940 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.371e-6■■■■□ 25
SMNDC1O75940 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.7■■□□□ 1.221e-6■■■■□ 25
SMNDC1O75940 ALDH16A1-204ENST00000593417 2343 ntTSL 222.68■■□□□ 1.221e-6■■■■□ 25
SMNDC1O75940 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.36■■□□□ 1.171e-6■■■■□ 25
SMNDC1O75940 ATG16L2-202ENST00000435507 2254 ntTSL 222.01■■□□□ 1.111e-6■■■■□ 25
SMNDC1O75940 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.11■□□□□ 0.971e-6■■■■□ 25
SMNDC1O75940 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.891e-6■■■■□ 25
SMNDC1O75940 MGAT4B-211ENST00000520019 831 ntTSL 319.9■□□□□ 0.782e-6■■■■□ 25
SMNDC1O75940 KMT2D-203ENST00000547610 636 ntTSL 519.3■□□□□ 0.681e-6■■■■□ 25
SMNDC1O75940 ATG16L2-212ENST00000538973 1456 ntTSL 518.84■□□□□ 0.611e-6■■■■□ 25
SMNDC1O75940 DDX5-205ENST00000577922 996 ntTSL 518.44■□□□□ 0.547e-10■■■■□ 25
SMNDC1O75940 DDX5-228ENST00000584279 676 ntTSL 318.44■□□□□ 0.547e-10■■■■□ 25
SMNDC1O75940 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.441e-6■■■■□ 25
SMNDC1O75940 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.431e-6■■■■□ 25
SMNDC1O75940 ATG16L2-207ENST00000536995 4577 ntTSL 217.43■□□□□ 0.381e-6■■■■□ 25
SMNDC1O75940 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.381e-6■■■■□ 25
SMNDC1O75940 PPAN-207ENST00000468881 627 ntTSL 216.32■□□□□ 0.21e-6■■■■□ 25
SMNDC1O75940 ATG16L2-206ENST00000535830 963 ntTSL 216.07■□□□□ 0.161e-6■■■■□ 25
SMNDC1O75940 ATG16L2-220ENST00000544490 3731 ntTSL 215.58■□□□□ 0.081e-6■■■■□ 25
SMNDC1O75940 ATG16L2-217ENST00000541999 537 ntTSL 315.43■□□□□ 0.061e-6■■■■□ 25
SMNDC1O75940 ALDH16A1-207ENST00000599652 3995 ntTSL 214.64□□□□□ -0.071e-6■■■■□ 25
SMNDC1O75940 DDX5-220ENST00000581806 576 ntTSL 414.47□□□□□ -0.097e-10■■■■□ 25
SMNDC1O75940 ATG16L2-203ENST00000439504 3841 ntTSL 1 (best)14.06□□□□□ -0.161e-6■■■■□ 25
SMNDC1O75940 GBA2-204ENST00000467252 1913 ntTSL 1 (best)13.99□□□□□ -0.171e-6■■■■□ 25
SMNDC1O75940 ATG16L2-215ENST00000541367 1575 ntTSL 513.63□□□□□ -0.231e-6■■■■□ 25
SMNDC1O75940 DDX5-219ENST00000581697 580 ntTSL 513.62□□□□□ -0.237e-10■■■■□ 25
SMNDC1O75940 DDX5-232ENST00000585111 1051 ntTSL 213.34□□□□□ -0.277e-10■■■■□ 25
SMNDC1O75940 DDX5-235ENST00000630471 473 ntTSL 4 BASIC12.86□□□□□ -0.357e-10■■■■□ 25
SMNDC1O75940 ATG16L2-213ENST00000540222 1400 ntTSL 512.84□□□□□ -0.351e-6■■■■□ 25
SMNDC1O75940 ATG16L2-218ENST00000542481 571 ntTSL 512.52□□□□□ -0.411e-6■■■■□ 25
SMNDC1O75940 BRD9-218ENST00000519838 396 ntTSL 212.5□□□□□ -0.411e-6■■■■□ 25
SMNDC1O75940 DDX5-207ENST00000578400 575 ntTSL 512.28□□□□□ -0.447e-10■■■■□ 25
SMNDC1O75940 ATG16L2-210ENST00000537837 784 ntTSL 512.05□□□□□ -0.481e-6■■■■□ 25
SMNDC1O75940 MGAT4B-210ENST00000519965 524 ntTSL 311.68□□□□□ -0.542e-6■■■■□ 25
SMNDC1O75940 ATG16L2-216ENST00000541554 295 ntTSL 311.23□□□□□ -0.611e-6■■■■□ 25
SMNDC1O75940 BRD9-203ENST00000475706 744 ntTSL 1 (best)10.41□□□□□ -0.741e-6■■■■□ 25
SMNDC1O75940 DDX5-233ENST00000585223 699 ntTSL 29.94□□□□□ -0.827e-10■■■■□ 25
SMNDC1O75940 DDX5-231ENST00000585060 572 ntTSL 48.22□□□□□ -1.097e-10■■■■□ 25
SMNDC1O75940 MKNK2-210ENST00000589534 454 ntTSL 224.02■■□□□ 1.441e-6■■■■□ 24.9
SMNDC1O75940 MKNK2-209ENST00000589509 352 ntTSL 511.03□□□□□ -0.641e-6■■■■□ 24.9
SMNDC1O75940 AGAP3-205ENST00000463381 2730 ntTSL 2 BASIC13.73□□□□□ -0.212e-6■■■■□ 24.9
SMNDC1O75940 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.182e-6■■■■□ 24.9
SMNDC1O75940 SEPT9-221ENST00000588958 879 ntTSL 214.62□□□□□ -0.072e-6■■■■□ 24.9
SMNDC1O75940 SEPT9-212ENST00000586128 752 ntTSL 412.44□□□□□ -0.422e-6■■■■□ 24.9
SMNDC1O75940 SEPT9-239ENST00000591704 749 ntTSL 210.54□□□□□ -0.722e-6■■■■□ 24.9
SMNDC1O75940 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.244e-10■■■■□ 24.8
SMNDC1O75940 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC28.77■■■□□ 2.29e-6■■■■□ 24.8
SMNDC1O75940 SLC25A10-207ENST00000574129 1523 ntTSL 527.46■■□□□ 1.999e-6■■■■□ 24.8
SMNDC1O75940 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.159e-6■■■■□ 24.8
SMNDC1O75940 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.999e-6■■■■□ 24.8
SMNDC1O75940 EPS8L2-215ENST00000530093 414 ntTSL 420.86■□□□□ 0.939e-6■■■■□ 24.8
SMNDC1O75940 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.874e-6■■■■□ 24.8
SMNDC1O75940 EPS8L2-213ENST00000529346 1718 ntTSL 220.24■□□□□ 0.839e-6■■■■□ 24.8
SMNDC1O75940 TRAF4-207ENST00000461195 787 ntTSL 220.16■□□□□ 0.823e-7■■■■□ 24.8
SMNDC1O75940 AMDHD2-212ENST00000566706 940 ntTSL 520.12■□□□□ 0.816e-6■■■■□ 24.8
SMNDC1O75940 EPS8L2-209ENST00000527199 540 ntTSL 319.89■□□□□ 0.779e-6■■■■□ 24.8
SMNDC1O75940 EPS8L2-210ENST00000527807 814 ntTSL 519.89■□□□□ 0.779e-6■■■■□ 24.8
SMNDC1O75940 ZNF248-204ENST00000395873 698 ntTSL 319.83■□□□□ 0.779e-6■■■■□ 24.8
SMNDC1O75940 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.759e-6■■■■□ 24.8
SMNDC1O75940 TRAF4-204ENST00000422344 631 ntTSL 319.69■□□□□ 0.743e-7■■■■□ 24.8
SMNDC1O75940 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.739e-6■■■■□ 24.8
SMNDC1O75940 BSG-209ENST00000574970 570 ntTSL 419.48■□□□□ 0.713e-6■■■■□ 24.8
SMNDC1O75940 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.692e-6■■■■□ 24.8
SMNDC1O75940 CSNK1D-221ENST00000582844 957 ntTSL 519.17■□□□□ 0.664e-6■■■■□ 24.8
SMNDC1O75940 TRAF4-203ENST00000394925 702 ntTSL 219.15■□□□□ 0.663e-7■■■■□ 24.8
SMNDC1O75940 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.14■□□□□ 0.659e-6■■■■□ 24.8
SMNDC1O75940 EPS8L2-224ENST00000533500 587 ntTSL 319.04■□□□□ 0.649e-6■■■■□ 24.8
SMNDC1O75940 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.649e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.639e-6■■■■□ 24.8
SMNDC1O75940 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.91■□□□□ 0.624e-6■■■■□ 24.8
SMNDC1O75940 EPS8L2-229ENST00000534755 474 ntTSL 418.77■□□□□ 0.69e-6■■■■□ 24.8
SMNDC1O75940 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.582e-6■■■■□ 24.8
SMNDC1O75940 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.61■□□□□ 0.579e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-225ENST00000576225 2316 ntTSL 218.59■□□□□ 0.579e-6■■■■□ 24.8
SMNDC1O75940 TOP3A-218ENST00000584669 580 ntTSL 418.56■□□□□ 0.569e-6■■■■□ 24.8
SMNDC1O75940 NFKBIA-202ENST00000553342 212 ntTSL 518.43■□□□□ 0.549e-6■■■■□ 24.8
SMNDC1O75940 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.539e-6■■■■□ 24.8
SMNDC1O75940 GPAA1-211ENST00000529503 878 ntTSL 518.32■□□□□ 0.529e-6■■■■□ 24.8
SMNDC1O75940 GPAA1-207ENST00000526341 557 ntTSL 518.32■□□□□ 0.529e-6■■■■□ 24.8
SMNDC1O75940 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.31■□□□□ 0.529e-6■■■■□ 24.8
SMNDC1O75940 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.59e-6■■■■□ 24.8
SMNDC1O75940 AMDHD2-210ENST00000565570 1844 ntTSL 518.14■□□□□ 0.54e-6■■■■□ 24.8
SMNDC1O75940 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.489e-6■■■■□ 24.8
Retrieved 100 of 11,362 protein–RNA pairs in 141.6 ms