Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC18.73■□□□□ 0.59
HMGB3O15347 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB3O15347 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB3O15347 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB3O15347 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB3O15347 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
HMGB3O15347 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB3O15347 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGB3O15347 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGB3O15347 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB3O15347 HNRNPLP2-201ENST00000568980 1570 ntBASIC18.72■□□□□ 0.59
HMGB3O15347 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB3O15347 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB3O15347 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB3O15347 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB3O15347 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB3O15347 AP003733.4-201ENST00000623785 1697 ntBASIC18.71■□□□□ 0.59
HMGB3O15347 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB3O15347 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB3O15347 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC18.71■□□□□ 0.59
HMGB3O15347 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB3O15347 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB3O15347 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB3O15347 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB3O15347 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB3O15347 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
HMGB3O15347 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HMGB3O15347 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGB3O15347 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB3O15347 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB3O15347 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGB3O15347 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB3O15347 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB3O15347 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB3O15347 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB3O15347 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB3O15347 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB3O15347 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB3O15347 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB3O15347 CIB2-204ENST00000557846 934 ntTSL 3 BASIC18.69■□□□□ 0.58
HMGB3O15347 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC18.69■□□□□ 0.58
HMGB3O15347 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
HMGB3O15347 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB3O15347 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB3O15347 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB3O15347 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
HMGB3O15347 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.69■□□□□ 0.58
HMGB3O15347 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB3O15347 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
HMGB3O15347 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.68■□□□□ 0.58
HMGB3O15347 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
HMGB3O15347 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB3O15347 DUX4L28-201ENST00000623687 678 ntBASIC18.68■□□□□ 0.58
HMGB3O15347 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB3O15347 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB3O15347 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB3O15347 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB3O15347 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB3O15347 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB3O15347 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB3O15347 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC18.67■□□□□ 0.58
HMGB3O15347 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB3O15347 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB3O15347 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB3O15347 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB3O15347 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB3O15347 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB3O15347 AC079834.2-201ENST00000609776 1949 ntBASIC18.67■□□□□ 0.58
HMGB3O15347 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB3O15347 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB3O15347 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB3O15347 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
HMGB3O15347 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB3O15347 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB3O15347 ME2-208ENST00000638937 2471 ntTSL 5 BASIC18.66■□□□□ 0.58
HMGB3O15347 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB3O15347 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HMGB3O15347 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGB3O15347 LINC00543-201ENST00000567234 1845 ntBASIC18.66■□□□□ 0.58
HMGB3O15347 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB3O15347 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB3O15347 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB3O15347 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB3O15347 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB3O15347 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HMGB3O15347 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
HMGB3O15347 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.66■□□□□ 0.58
HMGB3O15347 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB3O15347 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB3O15347 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB3O15347 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.65■□□□□ 0.58
HMGB3O15347 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB3O15347 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HMGB3O15347 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB3O15347 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
HMGB3O15347 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB3O15347 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC18.65■□□□□ 0.58
HMGB3O15347 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB3O15347 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB3O15347 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms