Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC32.57■■■□□ 2.8
CCDC61Q9Y6R9 AL512631.2-201ENST00000604634 923 ntBASIC32.57■■■□□ 2.8
CCDC61Q9Y6R9 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC32.57■■■□□ 2.8
CCDC61Q9Y6R9 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC32.56■■■□□ 2.8
CCDC61Q9Y6R9 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC32.56■■■□□ 2.8
CCDC61Q9Y6R9 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC32.56■■■□□ 2.8
CCDC61Q9Y6R9 AC110285.6-201ENST00000617652 491 ntBASIC32.56■■■□□ 2.8
CCDC61Q9Y6R9 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC32.56■■■□□ 2.8
CCDC61Q9Y6R9 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CCDC61Q9Y6R9 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC32.54■■■□□ 2.8
CCDC61Q9Y6R9 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC32.54■■■□□ 2.8
CCDC61Q9Y6R9 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CCDC61Q9Y6R9 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC32.54■■■□□ 2.8
CCDC61Q9Y6R9 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CCDC61Q9Y6R9 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC32.54■■■□□ 2.8
CCDC61Q9Y6R9 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC32.54■■■□□ 2.8
CCDC61Q9Y6R9 CD72-202ENST00000378430 585 ntTSL 3 BASIC32.53■■■□□ 2.8
CCDC61Q9Y6R9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC32.53■■■□□ 2.8
CCDC61Q9Y6R9 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
CCDC61Q9Y6R9 AC090877.2-201ENST00000558441 1738 ntBASIC32.52■■■□□ 2.8
CCDC61Q9Y6R9 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC32.52■■■□□ 2.8
CCDC61Q9Y6R9 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
CCDC61Q9Y6R9 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
CCDC61Q9Y6R9 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
CCDC61Q9Y6R9 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC32.52■■■□□ 2.8
CCDC61Q9Y6R9 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
CCDC61Q9Y6R9 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC32.51■■■□□ 2.8
CCDC61Q9Y6R9 AC096887.2-201ENST00000623443 1957 ntBASIC32.51■■■□□ 2.8
CCDC61Q9Y6R9 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC32.51■■■□□ 2.79
CCDC61Q9Y6R9 RASSF1-AS1-201ENST00000629828 790 ntBASIC32.51■■■□□ 2.79
CCDC61Q9Y6R9 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC32.51■■■□□ 2.79
CCDC61Q9Y6R9 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
CCDC61Q9Y6R9 AK3-203ENST00000447596 705 ntTSL 2 BASIC32.5■■■□□ 2.79
CCDC61Q9Y6R9 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC32.5■■■□□ 2.79
CCDC61Q9Y6R9 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC32.49■■■□□ 2.79
CCDC61Q9Y6R9 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
CCDC61Q9Y6R9 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC32.49■■■□□ 2.79
CCDC61Q9Y6R9 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
CCDC61Q9Y6R9 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
CCDC61Q9Y6R9 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
CCDC61Q9Y6R9 SNX5-217ENST00000606557 1087 ntBASIC32.48■■■□□ 2.79
CCDC61Q9Y6R9 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
CCDC61Q9Y6R9 AC096631.2-201ENST00000436136 790 ntBASIC32.47■■■□□ 2.79
CCDC61Q9Y6R9 CLTA-206ENST00000466396 695 ntTSL 2 BASIC32.47■■■□□ 2.79
CCDC61Q9Y6R9 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC32.47■■■□□ 2.79
CCDC61Q9Y6R9 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
CCDC61Q9Y6R9 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC32.47■■■□□ 2.79
CCDC61Q9Y6R9 TFPT-201ENST00000391757 774 ntTSL 5 BASIC32.46■■■□□ 2.79
CCDC61Q9Y6R9 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC32.46■■■□□ 2.79
CCDC61Q9Y6R9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC32.46■■■□□ 2.79
CCDC61Q9Y6R9 MIR6722-201ENST00000617286 78 ntBASIC32.46■■■□□ 2.79
CCDC61Q9Y6R9 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
CCDC61Q9Y6R9 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC32.45■■■□□ 2.79
CCDC61Q9Y6R9 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC32.45■■■□□ 2.79
CCDC61Q9Y6R9 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC32.45■■■□□ 2.79
CCDC61Q9Y6R9 AC097639.1-201ENST00000565519 1891 ntBASIC32.45■■■□□ 2.79
CCDC61Q9Y6R9 ERN1-208ENST00000606895 2068 ntBASIC32.45■■■□□ 2.79
CCDC61Q9Y6R9 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC32.44■■■□□ 2.78
CCDC61Q9Y6R9 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC32.44■■■□□ 2.78
CCDC61Q9Y6R9 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
CCDC61Q9Y6R9 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
CCDC61Q9Y6R9 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC32.44■■■□□ 2.78
CCDC61Q9Y6R9 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
CCDC61Q9Y6R9 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC32.43■■■□□ 2.78
CCDC61Q9Y6R9 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
CCDC61Q9Y6R9 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC32.43■■■□□ 2.78
CCDC61Q9Y6R9 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
CCDC61Q9Y6R9 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC32.43■■■□□ 2.78
CCDC61Q9Y6R9 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
CCDC61Q9Y6R9 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC32.43■■■□□ 2.78
CCDC61Q9Y6R9 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC32.43■■■□□ 2.78
CCDC61Q9Y6R9 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC61Q9Y6R9 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC61Q9Y6R9 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC32.42■■■□□ 2.78
CCDC61Q9Y6R9 AC005837.3-201ENST00000612163 286 ntBASIC32.42■■■□□ 2.78
CCDC61Q9Y6R9 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC61Q9Y6R9 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC61Q9Y6R9 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC61Q9Y6R9 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC32.41■■■□□ 2.78
CCDC61Q9Y6R9 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC32.41■■■□□ 2.78
CCDC61Q9Y6R9 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
CCDC61Q9Y6R9 AC133561.4-201ENST00000566112 224 ntBASIC32.41■■■□□ 2.78
CCDC61Q9Y6R9 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC32.41■■■□□ 2.78
CCDC61Q9Y6R9 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC32.41■■■□□ 2.78
CCDC61Q9Y6R9 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC32.41■■■□□ 2.78
CCDC61Q9Y6R9 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
CCDC61Q9Y6R9 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
CCDC61Q9Y6R9 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC32.4■■■□□ 2.78
CCDC61Q9Y6R9 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC32.4■■■□□ 2.78
CCDC61Q9Y6R9 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
CCDC61Q9Y6R9 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
CCDC61Q9Y6R9 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC32.39■■■□□ 2.78
CCDC61Q9Y6R9 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
CCDC61Q9Y6R9 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
CCDC61Q9Y6R9 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC32.39■■■□□ 2.78
CCDC61Q9Y6R9 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
CCDC61Q9Y6R9 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC32.39■■■□□ 2.78
CCDC61Q9Y6R9 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC32.38■■■□□ 2.77
CCDC61Q9Y6R9 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
CCDC61Q9Y6R9 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC32.38■■■□□ 2.77
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms