Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC26.05■■□□□ 1.76
CCDC65Q8IXS2 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC65Q8IXS2 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC65Q8IXS2 AL592295.1-201ENST00000400984 884 ntBASIC26.05■■□□□ 1.76
CCDC65Q8IXS2 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC26.05■■□□□ 1.76
CCDC65Q8IXS2 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC26.05■■□□□ 1.76
CCDC65Q8IXS2 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26.05■■□□□ 1.76
CCDC65Q8IXS2 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC26.05■■□□□ 1.76
CCDC65Q8IXS2 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC65Q8IXS2 AL139125.2-201ENST00000623134 1869 ntBASIC26.04■■□□□ 1.76
CCDC65Q8IXS2 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC65Q8IXS2 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC65Q8IXS2 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC65Q8IXS2 AC135731.1-201ENST00000569415 2548 ntBASIC26.04■■□□□ 1.76
CCDC65Q8IXS2 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
CCDC65Q8IXS2 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC26.04■■□□□ 1.76
CCDC65Q8IXS2 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC65Q8IXS2 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC26.04■■□□□ 1.76
CCDC65Q8IXS2 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC65Q8IXS2 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC65Q8IXS2 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC65Q8IXS2 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC65Q8IXS2 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC65Q8IXS2 BHLHE23-202ENST00000612929 1109 ntBASIC26.03■■□□□ 1.76
CCDC65Q8IXS2 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC65Q8IXS2 EED-207ENST00000528180 1745 ntTSL 5 BASIC26.02■■□□□ 1.76
CCDC65Q8IXS2 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC65Q8IXS2 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC65Q8IXS2 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC65Q8IXS2 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC26.02■■□□□ 1.76
CCDC65Q8IXS2 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC26.02■■□□□ 1.76
CCDC65Q8IXS2 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC65Q8IXS2 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC65Q8IXS2 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC65Q8IXS2 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC65Q8IXS2 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC65Q8IXS2 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC26.01■■□□□ 1.75
CCDC65Q8IXS2 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC26■■□□□ 1.75
CCDC65Q8IXS2 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC26■■□□□ 1.75
CCDC65Q8IXS2 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC26■■□□□ 1.75
CCDC65Q8IXS2 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC65Q8IXS2 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC26■■□□□ 1.75
CCDC65Q8IXS2 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC26■■□□□ 1.75
CCDC65Q8IXS2 MTX2-204ENST00000443241 799 ntTSL 3 BASIC26■■□□□ 1.75
CCDC65Q8IXS2 AC019171.1-201ENST00000601251 1056 ntBASIC26■■□□□ 1.75
CCDC65Q8IXS2 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC65Q8IXS2 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC26■■□□□ 1.75
CCDC65Q8IXS2 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC26■■□□□ 1.75
CCDC65Q8IXS2 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC65Q8IXS2 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC65Q8IXS2 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC25.99■■□□□ 1.75
CCDC65Q8IXS2 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
CCDC65Q8IXS2 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC65Q8IXS2 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC65Q8IXS2 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.99■■□□□ 1.75
CCDC65Q8IXS2 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC25.98■■□□□ 1.75
CCDC65Q8IXS2 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC65Q8IXS2 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC65Q8IXS2 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC65Q8IXS2 GUK1-208ENST00000366728 842 ntTSL 2 BASIC25.98■■□□□ 1.75
CCDC65Q8IXS2 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC25.98■■□□□ 1.75
CCDC65Q8IXS2 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC25.98■■□□□ 1.75
CCDC65Q8IXS2 AC074183.2-201ENST00000623112 922 ntBASIC25.98■■□□□ 1.75
CCDC65Q8IXS2 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC65Q8IXS2 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC65Q8IXS2 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC65Q8IXS2 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC65Q8IXS2 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC65Q8IXS2 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC65Q8IXS2 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC65Q8IXS2 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC25.96■■□□□ 1.75
CCDC65Q8IXS2 AL033527.3-201ENST00000566366 1196 ntBASIC25.96■■□□□ 1.75
CCDC65Q8IXS2 SSSCA1-AS1-201ENST00000567594 614 ntBASIC25.96■■□□□ 1.75
CCDC65Q8IXS2 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC65Q8IXS2 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC65Q8IXS2 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC25.95■■□□□ 1.75
CCDC65Q8IXS2 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC25.95■■□□□ 1.75
CCDC65Q8IXS2 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC65Q8IXS2 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
CCDC65Q8IXS2 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC65Q8IXS2 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.95■■□□□ 1.74
CCDC65Q8IXS2 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC65Q8IXS2 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC25.95■■□□□ 1.74
CCDC65Q8IXS2 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC65Q8IXS2 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25.94■■□□□ 1.74
CCDC65Q8IXS2 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC25.94■■□□□ 1.74
CCDC65Q8IXS2 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC65Q8IXS2 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC25.94■■□□□ 1.74
CCDC65Q8IXS2 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC25.94■■□□□ 1.74
CCDC65Q8IXS2 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC65Q8IXS2 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC65Q8IXS2 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC65Q8IXS2 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC25.94■■□□□ 1.74
CCDC65Q8IXS2 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC65Q8IXS2 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC65Q8IXS2 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC65Q8IXS2 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC65Q8IXS2 AC090877.2-201ENST00000558441 1738 ntBASIC25.93■■□□□ 1.74
CCDC65Q8IXS2 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC65Q8IXS2 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 758 ms