Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 NCAPD2-207ENST00000539084 4290 ntTSL 211.13□□□□□ -0.632e-10■□□□□ 10.8
LIN28BQ6ZN17 NCAPD2-202ENST00000382457 2844 ntTSL 510.73□□□□□ -0.692e-10■□□□□ 10.8
LIN28BQ6ZN17 NCAPD2-213ENST00000545732 543 ntTSL 54.4□□□□□ -1.712e-10■□□□□ 10.8
LIN28BQ6ZN17 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.844e-10■□□□□ 10.8
LIN28BQ6ZN17 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.544e-10■□□□□ 10.8
LIN28BQ6ZN17 HDGF-204ENST00000465180 2060 ntTSL 1 (best)16.54■□□□□ 0.244e-10■□□□□ 10.8
LIN28BQ6ZN17 HDGF-203ENST00000368209 2171 ntTSL 2 BASIC13.92□□□□□ -0.184e-10■□□□□ 10.8
LIN28BQ6ZN17 HDGF-208ENST00000482651 966 ntTSL 39.88□□□□□ -0.834e-10■□□□□ 10.8
LIN28BQ6ZN17 PSMD13-211ENST00000532025 653 ntTSL 319.13■□□□□ 0.652e-6■□□□□ 10.8
LIN28BQ6ZN17 PSMD13-202ENST00000382671 1489 ntTSL 1 (best)17.67■□□□□ 0.422e-6■□□□□ 10.8
LIN28BQ6ZN17 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.282e-6■□□□□ 10.8
LIN28BQ6ZN17 PSMD13-204ENST00000525665 1632 ntTSL 516.57■□□□□ 0.242e-6■□□□□ 10.8
LIN28BQ6ZN17 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.13■□□□□ 0.172e-6■□□□□ 10.8
LIN28BQ6ZN17 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.99■□□□□ 0.152e-6■□□□□ 10.8
LIN28BQ6ZN17 PSMD13-201ENST00000352303 1427 ntTSL 5 BASIC13.94□□□□□ -0.182e-6■□□□□ 10.8
LIN28BQ6ZN17 PSMD13-207ENST00000527982 2200 nt12.31□□□□□ -0.442e-6■□□□□ 10.8
LIN28BQ6ZN17 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.62e-7■□□□□ 10.8
LIN28BQ6ZN17 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC13.85□□□□□ -0.192e-7■□□□□ 10.8
LIN28BQ6ZN17 PLOD1-204ENST00000449038 762 ntTSL 519.01■□□□□ 0.635e-7■□□□□ 10.8
LIN28BQ6ZN17 GGH-208ENST00000523788 492 ntTSL 223.89■■□□□ 1.412e-6■□□□□ 10.8
LIN28BQ6ZN17 GGH-204ENST00000518966 574 ntTSL 217.91■□□□□ 0.462e-6■□□□□ 10.8
LIN28BQ6ZN17 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.051e-8■□□□□ 10.8
LIN28BQ6ZN17 CDC34-203ENST00000586788 900 ntTSL 227.83■■■□□ 2.051e-8■□□□□ 10.8
LIN28BQ6ZN17 PSMB5-201ENST00000334454 796 ntTSL 521.07■□□□□ 0.964e-8■□□□□ 10.8
LIN28BQ6ZN17 GGT1-224ENST00000466310 1249 ntTSL 1 (best)22.92■■□□□ 1.262e-6■□□□□ 10.8
LIN28BQ6ZN17 GGT1-210ENST00000412658 2091 ntTSL 518.42■□□□□ 0.542e-6■□□□□ 10.8
LIN28BQ6ZN17 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.012e-6■□□□□ 10.8
LIN28BQ6ZN17 GGT1-213ENST00000425895 2632 ntTSL 214.96□□□□□ -0.012e-6■□□□□ 10.8
LIN28BQ6ZN17 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.092e-6■□□□□ 10.8
LIN28BQ6ZN17 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.192e-6■□□□□ 10.8
LIN28BQ6ZN17 GLUL-206ENST00000462444 793 ntTSL 210.38□□□□□ -0.752e-9■□□□□ 10.8
LIN28BQ6ZN17 GLUL-208ENST00000475808 868 ntTSL 210.17□□□□□ -0.782e-9■□□□□ 10.8
LIN28BQ6ZN17 GLUL-209ENST00000480604 908 ntTSL 58.66□□□□□ -1.022e-9■□□□□ 10.8
LIN28BQ6ZN17 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.136e-12■□□□□ 10.8
LIN28BQ6ZN17 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC6.69□□□□□ -1.346e-12■□□□□ 10.8
LIN28BQ6ZN17 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC5.51□□□□□ -1.536e-12■□□□□ 10.8
LIN28BQ6ZN17 IRX3-203ENST00000558180 1540 ntTSL 430.91■■■□□ 2.542e-10■□□□□ 10.8
LIN28BQ6ZN17 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.952e-10■□□□□ 10.8
LIN28BQ6ZN17 IRX3-202ENST00000558054 444 ntTSL 210.83□□□□□ -0.682e-10■□□□□ 10.8
LIN28BQ6ZN17 SREBF2-208ENST00000491541 4043 ntTSL 1 (best)9.13□□□□□ -0.952e-10■□□□□ 10.8
LIN28BQ6ZN17 MGAT4A-207ENST00000484936 768 ntTSL 54.04□□□□□ -1.762e-7■□□□□ 10.8
LIN28BQ6ZN17 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.782e-7■□□□□ 10.8
LIN28BQ6ZN17 DHCR7-209ENST00000531364 507 ntTSL 425.24■■□□□ 1.634e-6■□□□□ 10.8
LIN28BQ6ZN17 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.64e-8■□□□□ 10.8
LIN28BQ6ZN17 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC24.16■■□□□ 1.464e-8■□□□□ 10.8
LIN28BQ6ZN17 NIPSNAP2-210ENST00000487370 494 ntTSL 323.63■■□□□ 1.374e-8■□□□□ 10.8
LIN28BQ6ZN17 DHCR7-208ENST00000529990 525 ntTSL 423.58■■□□□ 1.374e-6■□□□□ 10.8
LIN28BQ6ZN17 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.354e-8■□□□□ 10.8
LIN28BQ6ZN17 NIPSNAP2-203ENST00000437587 818 ntTSL 522.63■■□□□ 1.214e-8■□□□□ 10.8
LIN28BQ6ZN17 REXO2-216ENST00000544196 452 ntTSL 3 BASIC22.39■■□□□ 1.174e-8■□□□□ 10.8
LIN28BQ6ZN17 REXO2-215ENST00000544010 848 ntTSL 222.26■■□□□ 1.154e-8■□□□□ 10.8
LIN28BQ6ZN17 FN3KRP-207ENST00000574832 1422 ntTSL 221.43■■□□□ 1.024e-8■□□□□ 10.8
LIN28BQ6ZN17 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.984e-8■□□□□ 10.8
LIN28BQ6ZN17 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.18■□□□□ 0.984e-8■□□□□ 10.8
LIN28BQ6ZN17 SLC45A4-205ENST00000520137 835 ntTSL 321.16■□□□□ 0.984e-8■□□□□ 10.8
LIN28BQ6ZN17 REXO2-214ENST00000543243 552 ntTSL 220.59■□□□□ 0.894e-8■□□□□ 10.8
LIN28BQ6ZN17 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC20.51■□□□□ 0.874e-8■□□□□ 10.8
LIN28BQ6ZN17 DHCR7-204ENST00000525346 520 ntTSL 419.06■□□□□ 0.644e-6■□□□□ 10.8
LIN28BQ6ZN17 STAR-204ENST00000522050 748 ntTSL 518.74■□□□□ 0.594e-8■□□□□ 10.8
LIN28BQ6ZN17 NAT9-225ENST00000583834 1993 ntTSL 318.51■□□□□ 0.554e-8■□□□□ 10.8
LIN28BQ6ZN17 VDAC2-212ENST00000481876 822 ntTSL 318.36■□□□□ 0.534e-8■□□□□ 10.8
LIN28BQ6ZN17 CAND1-205ENST00000540525 527 ntTSL 417.8■□□□□ 0.444e-8■□□□□ 10.8
LIN28BQ6ZN17 VDAC2-210ENST00000472137 859 ntTSL 517.59■□□□□ 0.414e-8■□□□□ 10.8
LIN28BQ6ZN17 VDAC2-204ENST00000344036 681 ntTSL 317.43■□□□□ 0.384e-8■□□□□ 10.8
LIN28BQ6ZN17 HPS4-216ENST00000493455 986 ntTSL 317.22■□□□□ 0.354e-8■□□□□ 10.8
LIN28BQ6ZN17 VDAC2-208ENST00000468285 850 ntTSL 216.87■□□□□ 0.294e-8■□□□□ 10.8
LIN28BQ6ZN17 VDAC2-211ENST00000475142 819 ntTSL 316.87■□□□□ 0.294e-8■□□□□ 10.8
LIN28BQ6ZN17 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.48■□□□□ 0.234e-8■□□□□ 10.8
LIN28BQ6ZN17 DHCR7-207ENST00000527452 579 ntTSL 416.43■□□□□ 0.224e-6■□□□□ 10.8
LIN28BQ6ZN17 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.42■□□□□ 0.224e-8■□□□□ 10.8
LIN28BQ6ZN17 STAR-203ENST00000521236 402 ntTSL 316.36■□□□□ 0.214e-8■□□□□ 10.8
LIN28BQ6ZN17 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.184e-8■□□□□ 10.8
LIN28BQ6ZN17 VDAC2-213ENST00000498394 804 ntTSL 515.93■□□□□ 0.144e-8■□□□□ 10.8
LIN28BQ6ZN17 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC15.11■□□□□ 0.014e-8■□□□□ 10.8
LIN28BQ6ZN17 NIPSNAP2-204ENST00000446692 662 ntTSL 414.53□□□□□ -0.084e-8■□□□□ 10.8
LIN28BQ6ZN17 AK2-207ENST00000482191 599 ntTSL 214.4□□□□□ -0.14e-8■□□□□ 10.8
LIN28BQ6ZN17 FN3KRP-203ENST00000571594 625 ntTSL 314.09□□□□□ -0.154e-8■□□□□ 10.8
LIN28BQ6ZN17 HPS4-218ENST00000519774 471 ntTSL 213.13□□□□□ -0.314e-8■□□□□ 10.8
LIN28BQ6ZN17 EPS15-204ENST00000464478 698 ntTSL 512.58□□□□□ -0.44e-8■□□□□ 10.8
LIN28BQ6ZN17 AK2-209ENST00000491241 596 ntTSL 312.12□□□□□ -0.474e-8■□□□□ 10.8
LIN28BQ6ZN17 VDAC2-206ENST00000447677 738 ntTSL 311.79□□□□□ -0.524e-8■□□□□ 10.8
LIN28BQ6ZN17 SLC45A4-202ENST00000517878 3470 ntTSL 1 (best) BASIC10.93□□□□□ -0.664e-8■□□□□ 10.8
LIN28BQ6ZN17 DDX24-207ENST00000555762 5573 ntTSL 1 (best)10.79□□□□□ -0.684e-8■□□□□ 10.8
LIN28BQ6ZN17 HPS4-202ENST00000398145 4497 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.764e-8■□□□□ 10.8
LIN28BQ6ZN17 REXO2-212ENST00000542186 463 ntTSL 39.9□□□□□ -0.824e-8■□□□□ 10.8
LIN28BQ6ZN17 DDX24-202ENST00000544005 2214 ntTSL 2 BASIC9.67□□□□□ -0.864e-8■□□□□ 10.8
LIN28BQ6ZN17 STAR-202ENST00000520114 3448 ntTSL 29.59□□□□□ -0.874e-8■□□□□ 10.8
LIN28BQ6ZN17 DDX24-210ENST00000622786 1730 ntTSL 5 BASIC9.25□□□□□ -0.934e-8■□□□□ 10.8
LIN28BQ6ZN17 NIPSNAP2-206ENST00000456204 660 ntTSL 39.1□□□□□ -0.954e-8■□□□□ 10.8
LIN28BQ6ZN17 EPS15-201ENST00000371727 1773 ntTSL 29.07□□□□□ -0.964e-8■□□□□ 10.8
LIN28BQ6ZN17 DDX24-203ENST00000553400 618 ntTSL 38.78□□□□□ -14e-8■□□□□ 10.8
LIN28BQ6ZN17 HPS4-208ENST00000464362 4277 ntTSL 58.73□□□□□ -1.014e-8■□□□□ 10.8
LIN28BQ6ZN17 HPS4-203ENST00000402105 3562 ntTSL 1 (best) BASIC8.69□□□□□ -1.024e-8■□□□□ 10.8
LIN28BQ6ZN17 HPS4-206ENST00000439453 3936 ntTSL 1 (best)8.62□□□□□ -1.034e-8■□□□□ 10.8
LIN28BQ6ZN17 HPS4-209ENST00000466781 6136 ntTSL 1 (best)8.41□□□□□ -1.064e-8■□□□□ 10.8
LIN28BQ6ZN17 DDX24-201ENST00000330836 2738 ntTSL 1 (best) BASIC8.31□□□□□ -1.084e-8■□□□□ 10.8
LIN28BQ6ZN17 DDX24-205ENST00000555054 2769 ntTSL 5 BASIC8.16□□□□□ -1.14e-8■□□□□ 10.8
LIN28BQ6ZN17 HPS4-201ENST00000336873 3786 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.124e-8■□□□□ 10.8
LIN28BQ6ZN17 HPS4-205ENST00000429411 3492 ntTSL 27.86□□□□□ -1.154e-8■□□□□ 10.8
LIN28BQ6ZN17 VDAC2-201ENST00000298468 931 ntTSL 57.71□□□□□ -1.184e-8■□□□□ 10.8
Retrieved 100 of 21,972 protein–RNA pairs in 496.4 ms