RNA–Protein interactions for RNA: ENST00000402105.7

HPS4-203, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best) BASIC

Gene HPS4, Length 3,562 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-203ENST00000402105 NISCHQ9Y2I1 1504 aa17.45■□□□□ 0.38
HPS4-203ENST00000402105 SHROOM4Q9ULL8 1493 aa15.95■□□□□ 0.14
HPS4-203ENST00000402105 SUPT5HO00267 1087 aaKnown RBP15.85■□□□□ 0.13
HPS4-203ENST00000402105 DCAF8L2P0C7V8 631 aa15.53■□□□□ 0.08
HPS4-203ENST00000402105 PCGF6Q9BYE7 350 aa15.33■□□□□ 0.04
HPS4-203ENST00000402105 PPARGC1BQ86YN6 1023 aaKnown RBP15.19■□□□□ 0.02
HPS4-203ENST00000402105 HRCP23327 699 aa15.19■□□□□ 0.02
HPS4-203ENST00000402105 CHIC1Q5VXU3 224 aa15.14■□□□□ 0.01
HPS4-203ENST00000402105 MYO15BQ96JP2 1530 aa15.03■□□□□ -0
HPS4-203ENST00000402105 LOC105371045A0A1W2PR82 267 aa15.02■□□□□ -0
HPS4-203ENST00000402105 EHMT2Q96KQ7 1210 aa14.95□□□□□ -0.02
HPS4-203ENST00000402105 FAM9AQ8IZU1 332 aaPredicted RBP14.78□□□□□ -0.04
HPS4-203ENST00000402105 ZCCHC6Q5VYS8 1495 aaKnown RBP14.72□□□□□ -0.05
HPS4-203ENST00000402105 TRIM26Q12899 539 aaPredicted RBP14.65□□□□□ -0.06
HPS4-203ENST00000402105 TRIM41Q8WV44 630 aa14.53□□□□□ -0.08
HPS4-203ENST00000402105 TTBK1Q5TCY1 1321 aaPredicted RBP14.47□□□□□ -0.09
HPS4-203ENST00000402105 DCAF1Q9Y4B6 1507 aa14.44□□□□□ -0.1
HPS4-203ENST00000402105 ZEB1P37275 1124 aaPredicted RBP14.36□□□□□ -0.11
HPS4-203ENST00000402105 SCAF1Q9H7N4 1312 aaKnown RBP14.31□□□□□ -0.12
HPS4-203ENST00000402105 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.31□□□□□ -0.12
HPS4-203ENST00000402105 CCDC180Q9P1Z9 1646 aa14.29□□□□□ -0.12
HPS4-203ENST00000402105 CCER1Q8TC90 406 aaPredicted RBP14.28□□□□□ -0.12
HPS4-203ENST00000402105 PELP1Q8IZL8 1130 aaKnown RBP14.14□□□□□ -0.15
HPS4-203ENST00000402105 YTHDC1Q96MU7 727 aaKnown RBP14.09□□□□□ -0.15
HPS4-203ENST00000402105 RSF1Q96T23 1441 aaPredicted RBP14.09□□□□□ -0.15
HPS4-203ENST00000402105 NEUROD1Q13562 356 aa14.08□□□□□ -0.16
HPS4-203ENST00000402105 SCRIBQ14160 1630 aa14.06□□□□□ -0.16
HPS4-203ENST00000402105 GTF3C3Q9Y5Q9 886 aa14.04□□□□□ -0.16
HPS4-203ENST00000402105 DIEXFQ68CQ4 756 aaKnown RBP14.04□□□□□ -0.16
HPS4-203ENST00000402105 ACIN1Q9UKV3 1341 aaKnown RBP14.02□□□□□ -0.17
HPS4-203ENST00000402105 CENPBP07199 599 aaPredicted RBP13.98□□□□□ -0.17
HPS4-203ENST00000402105 RANGAP1P46060 587 aaPredicted RBP13.97□□□□□ -0.17
HPS4-203ENST00000402105 ABCC9O60706 1549 aa13.97□□□□□ -0.17
HPS4-203ENST00000402105 RB1CC1Q8TDY2 1594 aa13.96□□□□□ -0.17
HPS4-203ENST00000402105 UBTFP17480 764 aaKnown RBP13.94□□□□□ -0.18
HPS4-203ENST00000402105 HNRNPUL2Q1KMD3 747 aaKnown RBP13.88□□□□□ -0.19
HPS4-203ENST00000402105 CECR2Q9BXF3 1484 aa13.86□□□□□ -0.19
HPS4-203ENST00000402105 ZNF316A6NFI3 1004 aaPredicted RBP13.74□□□□□ -0.21
HPS4-203ENST00000402105 MROH2BQ7Z745 1585 aa13.73□□□□□ -0.21
HPS4-203ENST00000402105 MIER1Q8N108 512 aa13.71□□□□□ -0.22
HPS4-203ENST00000402105 APLP2Q06481 763 aa13.68□□□□□ -0.22
HPS4-203ENST00000402105 CSRNP3Q8WYN3 585 aa13.65□□□□□ -0.22
HPS4-203ENST00000402105 WIZO95785 1651 aa13.64□□□□□ -0.23
HPS4-203ENST00000402105 CEP162Q5TB80 1403 aa13.63□□□□□ -0.23
HPS4-203ENST00000402105 SOGA1O94964 1423 aa13.62□□□□□ -0.23
HPS4-203ENST00000402105 ABCC8Q09428 1581 aa13.62□□□□□ -0.23
HPS4-203ENST00000402105 CCDC88BA6NC98 1476 aa13.61□□□□□ -0.23
HPS4-203ENST00000402105 PABPN1Q86U42 306 aaKnown RBP eCLIP13.59□□□□□ -0.23
HPS4-203ENST00000402105 ITGAEP38570 1179 aa13.55□□□□□ -0.24
HPS4-203ENST00000402105 RUSC2Q8N2Y8 1516 aa13.53□□□□□ -0.24
HPS4-203ENST00000402105 TNIKQ9UKE5 1360 aa13.47□□□□□ -0.25
HPS4-203ENST00000402105 MYT1Q01538 1121 aa13.44□□□□□ -0.26
HPS4-203ENST00000402105 BCANQ96GW7 911 aa13.42□□□□□ -0.26
HPS4-203ENST00000402105 WRNQ14191 1432 aaPredicted RBP eCLIP13.39□□□□□ -0.279e-6■■■■■ 50.1
HPS4-203ENST00000402105 NACADO15069 1562 aa13.37□□□□□ -0.27
HPS4-203ENST00000402105 CLIP1P30622 1438 aa13.35□□□□□ -0.27
HPS4-203ENST00000402105 BAZ1AQ9NRL2 1556 aaPredicted RBP13.35□□□□□ -0.27
HPS4-203ENST00000402105 GOLGA3Q08378 1498 aa13.34□□□□□ -0.27
HPS4-203ENST00000402105 ATP1B4Q9UN42 357 aaPredicted RBP13.33□□□□□ -0.28
HPS4-203ENST00000402105 SUPT16HQ9Y5B9 1047 aaKnown RBP13.3□□□□□ -0.28
HPS4-203ENST00000402105 KCNH8Q96L42 1107 aa13.29□□□□□ -0.28
HPS4-203ENST00000402105 HIRIP3Q9BW71 556 aaPredicted RBP13.27□□□□□ -0.29
HPS4-203ENST00000402105 KANK4Q5T7N3 995 aaPredicted RBP13.26□□□□□ -0.29
HPS4-203ENST00000402105 TOP2AP11388 1531 aaKnown RBP13.25□□□□□ -0.29
HPS4-203ENST00000402105 EEA1Q15075 1411 aa13.24□□□□□ -0.29
HPS4-203ENST00000402105 SMARCA2P51531 1590 aa13.24□□□□□ -0.29
HPS4-203ENST00000402105 DDX10Q13206 875 aaKnown RBP13.21□□□□□ -0.29
HPS4-203ENST00000402105 CEP164Q9UPV0 1460 aa13.2□□□□□ -0.3
HPS4-203ENST00000402105 RAPGEF2Q9Y4G8 1499 aa13.19□□□□□ -0.3
HPS4-203ENST00000402105 VPS8Q8N3P4 1428 aa13.19□□□□□ -0.3
HPS4-203ENST00000402105 FKBP8Q14318 412 aa13.19□□□□□ -0.3
HPS4-203ENST00000402105 EIF4G1Q04637 1599 aaKnown RBP13.18□□□□□ -0.3
HPS4-203ENST00000402105 FAM50AQ14320 339 aaKnown RBP13.17□□□□□ -0.3
HPS4-203ENST00000402105 SMARCA4P51532 1647 aa13.17□□□□□ -0.3
HPS4-203ENST00000402105 P3H3Q8IVL6 736 aa13.16□□□□□ -0.3
HPS4-203ENST00000402105 TRIM52Q96A61 297 aa13.16□□□□□ -0.3
HPS4-203ENST00000402105 TSHZ2Q9NRE2 1034 aa13.15□□□□□ -0.3
HPS4-203ENST00000402105 DHX57Q6P158 1386 aaKnown RBP13.15□□□□□ -0.31
HPS4-203ENST00000402105 SIN3AQ96ST3 1273 aa13.13□□□□□ -0.31
HPS4-203ENST00000402105 NEFLP07196 543 aa13.11□□□□□ -0.31
HPS4-203ENST00000402105 SYNJ1O43426 1573 aa13.07□□□□□ -0.32
HPS4-203ENST00000402105 IRX6P78412 446 aaPredicted RBP13.04□□□□□ -0.32
HPS4-203ENST00000402105 ANP32EQ9BTT0 268 aa13.04□□□□□ -0.32
HPS4-203ENST00000402105 CNGB1Q14028 1251 aaPredicted RBP13.04□□□□□ -0.32
HPS4-203ENST00000402105 KIF21BO75037 1637 aa13.03□□□□□ -0.32
HPS4-203ENST00000402105 CCNB3Q8WWL7 1395 aa12.99□□□□□ -0.33
HPS4-203ENST00000402105 CLSPNQ9HAW4 1339 aa12.99□□□□□ -0.33
HPS4-203ENST00000402105 ANP32CO43423 234 aa12.99□□□□□ -0.33
HPS4-203ENST00000402105 BAZ1BQ9UIG0 1483 aaKnown RBP12.99□□□□□ -0.33
HPS4-203ENST00000402105 RAB3GAP2Q9H2M9 1393 aa12.97□□□□□ -0.33
HPS4-203ENST00000402105 ARAP1Q96P48 1450 aa12.93□□□□□ -0.34
HPS4-203ENST00000402105 ERICH6Q7L0X2 663 aa12.93□□□□□ -0.34
HPS4-203ENST00000402105 RBM19Q9Y4C8 960 aaKnown RBP12.92□□□□□ -0.34
HPS4-203ENST00000402105 ATAD2BQ9ULI0 1458 aa12.91□□□□□ -0.34
HPS4-203ENST00000402105 HNRNPUQ00839 825 aaKnown RBP eCLIP12.91□□□□□ -0.34
HPS4-203ENST00000402105 SENP3-EIF4A1A0A087X0R7 540 aa12.88□□□□□ -0.35
HPS4-203ENST00000402105 BCL11AQ9H165 835 aa12.88□□□□□ -0.35
HPS4-203ENST00000402105 KIF27Q86VH2 1401 aa12.86□□□□□ -0.35
HPS4-203ENST00000402105 ARID3CA6NKF2 412 aa12.85□□□□□ -0.35
HPS4-203ENST00000402105 POLR3GLQ9BT43 218 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms