RNA–Protein interactions for RNA: ENST00000519774.5

HPS4-218, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-218ENST00000519774 NISCHQ9Y2I1 1504 aa28.52■■■□□ 2.16
HPS4-218ENST00000519774 CCDC180Q9P1Z9 1646 aa25.33■■□□□ 1.65
HPS4-218ENST00000519774 AEBP2Q6ZN18 517 aaPredicted RBP25.04■■□□□ 1.6
HPS4-218ENST00000519774 ABCC9O60706 1549 aa24.67■■□□□ 1.54
HPS4-218ENST00000519774 CHIC1Q5VXU3 224 aa24.48■■□□□ 1.51
HPS4-218ENST00000519774 DCAF8L2P0C7V8 631 aa23.81■■□□□ 1.4
HPS4-218ENST00000519774 ZCCHC6Q5VYS8 1495 aaKnown RBP23.81■■□□□ 1.4
HPS4-218ENST00000519774 RB1CC1Q8TDY2 1594 aa23.77■■□□□ 1.4
HPS4-218ENST00000519774 NACADO15069 1562 aa23.74■■□□□ 1.39
HPS4-218ENST00000519774 MYO15BQ96JP2 1530 aa23.61■■□□□ 1.37
HPS4-218ENST00000519774 DCAF1Q9Y4B6 1507 aa23.57■■□□□ 1.36
HPS4-218ENST00000519774 UNC13AQ9UPW8 1703 aa23.27■■□□□ 1.32
HPS4-218ENST00000519774 SCRIBQ14160 1630 aa23.17■■□□□ 1.3
HPS4-218ENST00000519774 PABPN1Q86U42 306 aaKnown RBP eCLIP23.06■■□□□ 1.28
HPS4-218ENST00000519774 BICRAQ9NZM4 1560 aa23.04■■□□□ 1.28
HPS4-218ENST00000519774 SHROOM4Q9ULL8 1493 aa22.78■■□□□ 1.24
HPS4-218ENST00000519774 DNAJC5BQ9UF47 199 aa22.46■■□□□ 1.19
HPS4-218ENST00000519774 EIF4G1Q04637 1599 aaKnown RBP22.43■■□□□ 1.18
HPS4-218ENST00000519774 CC2D2AQ9P2K1 1620 aa22.31■■□□□ 1.16
HPS4-218ENST00000519774 CECR2Q9BXF3 1484 aa22.22■■□□□ 1.15
HPS4-218ENST00000519774 SMARCA4P51532 1647 aa22.14■■□□□ 1.14
HPS4-218ENST00000519774 BAZ1AQ9NRL2 1556 aaPredicted RBP22.12■■□□□ 1.13
HPS4-218ENST00000519774 MROH2BQ7Z745 1585 aa22■■□□□ 1.11
HPS4-218ENST00000519774 ATAD2BQ9ULI0 1458 aa21.95■■□□□ 1.1
HPS4-218ENST00000519774 SMARCA2P51531 1590 aa21.95■■□□□ 1.1
HPS4-218ENST00000519774 NCAPD3P42695 1498 aa21.89■■□□□ 1.09
HPS4-218ENST00000519774 PEG3Q9GZU2 1588 aa21.87■■□□□ 1.09
HPS4-218ENST00000519774 HMGXB3Q12766 1538 aa21.84■■□□□ 1.09
HPS4-218ENST00000519774 BAZ1BQ9UIG0 1483 aaKnown RBP21.81■■□□□ 1.08
HPS4-218ENST00000519774 WIZO95785 1651 aa21.8■■□□□ 1.08
HPS4-218ENST00000519774 RSF1Q96T23 1441 aaPredicted RBP21.78■■□□□ 1.08
HPS4-218ENST00000519774 TOP2AP11388 1531 aaKnown RBP21.56■■□□□ 1.04
HPS4-218ENST00000519774 PHF23Q9BUL5 403 aaPredicted RBP21.52■■□□□ 1.04
HPS4-218ENST00000519774 NESP48681 1621 aa21.39■■□□□ 1.01
HPS4-218ENST00000519774 SUPT5HO00267 1087 aaKnown RBP21.38■■□□□ 1.01
HPS4-218ENST00000519774 LAMC3Q9Y6N6 1575 aa21.33■■□□□ 1.01
HPS4-218ENST00000519774 CCDC88BA6NC98 1476 aa21.28■■□□□ 1
HPS4-218ENST00000519774 SENP3Q9H4L4 574 aaPredicted RBP21.27■■□□□ 1
HPS4-218ENST00000519774 ERCC6Q03468 1493 aa21.26■□□□□ 0.99
HPS4-218ENST00000519774 CADPSQ9ULU8 1353 aa21.26■□□□□ 0.99
HPS4-218ENST00000519774 KIF21AQ7Z4S6 1674 aa21.18■□□□□ 0.98
HPS4-218ENST00000519774 CFTRP13569 1480 aa21.17■□□□□ 0.98
HPS4-218ENST00000519774 PDS5BQ9NTI5 1447 aa21.16■□□□□ 0.98
HPS4-218ENST00000519774 PRDM2Q13029 1718 aa21.09■□□□□ 0.97
HPS4-218ENST00000519774 FANCD2Q9BXW9 1451 aa21.06■□□□□ 0.96
HPS4-218ENST00000519774 THOC2Q8NI27 1593 aaKnown RBP21.04■□□□□ 0.96
HPS4-218ENST00000519774 CEP164Q9UPV0 1460 aa21.03■□□□□ 0.96
HPS4-218ENST00000519774 MRC2Q9UBG0 1479 aa20.97■□□□□ 0.95
HPS4-218ENST00000519774 CUX2O14529 1486 aa20.94■□□□□ 0.94
HPS4-218ENST00000519774 WDR62O43379 1518 aa20.89■□□□□ 0.94
HPS4-218ENST00000519774 URB2Q14146 1524 aaKnown RBP20.85■□□□□ 0.93
HPS4-218ENST00000519774 TOPBP1Q92547 1522 aa20.74■□□□□ 0.91
HPS4-218ENST00000519774 DNMBPQ6XZF7 1577 aa20.74■□□□□ 0.91
HPS4-218ENST00000519774 ABCC8Q09428 1581 aa20.71■□□□□ 0.91
HPS4-218ENST00000519774 CUX1P39880 1505 aa20.64■□□□□ 0.9
HPS4-218ENST00000519774 POLA1P09884 1462 aaPredicted RBP20.57■□□□□ 0.88
HPS4-218ENST00000519774 FGD5Q6ZNL6 1462 aa20.56■□□□□ 0.88
HPS4-218ENST00000519774 IFT140Q96RY7 1462 aa20.56■□□□□ 0.88
HPS4-218ENST00000519774 WRNQ14191 1432 aaPredicted RBP eCLIP20.55■□□□□ 0.88
HPS4-218ENST00000519774 SYNJ1O43426 1573 aa20.52■□□□□ 0.88
HPS4-218ENST00000519774 TARBP1Q13395 1621 aaKnown RBP20.5■□□□□ 0.87
HPS4-218ENST00000519774 BIVM-ERCC5R4GMW8 1640 aa20.5■□□□□ 0.87
HPS4-218ENST00000519774 RAD54L2Q9Y4B4 1467 aa20.5■□□□□ 0.87
HPS4-218ENST00000519774 TOP2BQ02880 1626 aa20.49■□□□□ 0.87
HPS4-218ENST00000519774 ZNF608Q9ULD9 1512 aaPredicted RBP20.48■□□□□ 0.87
HPS4-218ENST00000519774 SOGA1O94964 1423 aa20.47■□□□□ 0.87
HPS4-218ENST00000519774 EIF4G3O43432 1585 aaKnown RBP20.43■□□□□ 0.86
HPS4-218ENST00000519774 WDR97A6NE52 1622 aa20.4■□□□□ 0.86
HPS4-218ENST00000519774 AQRO60306 1485 aaKnown RBP eCLIP20.37■□□□□ 0.853e-7■■■■■ 30.5
HPS4-218ENST00000519774 TDRD9Q8NDG6 1382 aaKnown RBP20.36■□□□□ 0.85
HPS4-218ENST00000519774 ABCA10Q8WWZ4 1543 aa20.33■□□□□ 0.85
HPS4-218ENST00000519774 ABCA5Q8WWZ7 1642 aa20.27■□□□□ 0.84
HPS4-218ENST00000519774 PBRM1Q86U86 1689 aa20.26■□□□□ 0.83
HPS4-218ENST00000519774 GAPVD1Q14C86 1478 aa20.25■□□□□ 0.83
HPS4-218ENST00000519774 GRIN2BQ13224 1484 aa20.24■□□□□ 0.83
HPS4-218ENST00000519774 SNAPC4Q5SXM2 1469 aa20.21■□□□□ 0.83
HPS4-218ENST00000519774 CHD1O14646 1710 aa20.17■□□□□ 0.82
HPS4-218ENST00000519774 MAGI1Q96QZ7 1491 aaPredicted RBP20.16■□□□□ 0.82
HPS4-218ENST00000519774 TRIM41Q8WV44 630 aa20.15■□□□□ 0.82
HPS4-218ENST00000519774 FBLN2P98095 1184 aa20.12■□□□□ 0.81
HPS4-218ENST00000519774 KIF27Q86VH2 1401 aa20.1■□□□□ 0.81
HPS4-218ENST00000519774 DNAJC5Q9H3Z4 198 aa20.1■□□□□ 0.81
HPS4-218ENST00000519774 ERICH3Q5RHP9 1530 aa20.1■□□□□ 0.81
HPS4-218ENST00000519774 ADAMTS12P58397 1594 aa20.08■□□□□ 0.81
HPS4-218ENST00000519774 SYNJ2O15056 1496 aa20.08■□□□□ 0.81
HPS4-218ENST00000519774 OSCARQ8IYS5 282 aa20.08■□□□□ 0.81
HPS4-218ENST00000519774 CHMP7Q8WUX9 453 aaPredicted RBP20.06■□□□□ 0.8
HPS4-218ENST00000519774 FHAD1B1AJZ9 1412 aa20.02■□□□□ 0.79
HPS4-218ENST00000519774 GRIN2AQ12879 1464 aa19.98■□□□□ 0.79
HPS4-218ENST00000519774 CUL7Q14999 1698 aa19.97■□□□□ 0.79
HPS4-218ENST00000519774 RUSC2Q8N2Y8 1516 aa19.97■□□□□ 0.79
HPS4-218ENST00000519774 IGF1RP08069 1367 aa19.96■□□□□ 0.79
HPS4-218ENST00000519774 CLASP1Q7Z460 1538 aa19.91■□□□□ 0.78
HPS4-218ENST00000519774 PLPPR3Q6T4P5 718 aa19.9■□□□□ 0.78
HPS4-218ENST00000519774 CEP170Q5SW79 1584 aa19.89■□□□□ 0.77
HPS4-218ENST00000519774 CARMIL1Q5VZK9 1371 aa19.88■□□□□ 0.77
HPS4-218ENST00000519774 NUP160Q12769 1436 aa19.86■□□□□ 0.77
HPS4-218ENST00000519774 RIMBP3CA6NJZ7 1639 aa19.8■□□□□ 0.76
HPS4-218ENST00000519774 RIMBP3BA6NNM3 1639 aa19.8■□□□□ 0.76
HPS4-218ENST00000519774 RIMBP3Q9UFD9 1639 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms