Protein–RNA interactions for Protein: Q6ZW05

PTCHD4, Patched domain-containing protein 4, humanhuman

Predictions only

Length 846 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4Q6ZW05 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PTCHD4Q6ZW05 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.58■■□□□ 1.05
PTCHD4Q6ZW05 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD4Q6ZW05 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
PTCHD4Q6ZW05 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD4Q6ZW05 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD4Q6ZW05 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD4Q6ZW05 MIR7108-201ENST00000614319 87 ntBASIC21.58■■□□□ 1.05
PTCHD4Q6ZW05 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
PTCHD4Q6ZW05 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTCHD4Q6ZW05 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTCHD4Q6ZW05 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTCHD4Q6ZW05 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
PTCHD4Q6ZW05 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTCHD4Q6ZW05 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTCHD4Q6ZW05 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD4Q6ZW05 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD4Q6ZW05 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD4Q6ZW05 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD4Q6ZW05 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD4Q6ZW05 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
PTCHD4Q6ZW05 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD4Q6ZW05 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD4Q6ZW05 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD4Q6ZW05 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD4Q6ZW05 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD4Q6ZW05 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD4Q6ZW05 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD4Q6ZW05 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.55■■□□□ 1.04
PTCHD4Q6ZW05 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.55■■□□□ 1.04
PTCHD4Q6ZW05 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.55■■□□□ 1.04
PTCHD4Q6ZW05 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD4Q6ZW05 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD4Q6ZW05 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
PTCHD4Q6ZW05 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTCHD4Q6ZW05 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PTCHD4Q6ZW05 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
PTCHD4Q6ZW05 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.54■■□□□ 1.04
PTCHD4Q6ZW05 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PTCHD4Q6ZW05 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.54■■□□□ 1.04
PTCHD4Q6ZW05 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 AC141586.4-201ENST00000624558 1573 ntBASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD4Q6ZW05 AC068473.5-201ENST00000616428 2072 ntBASIC21.52■■□□□ 1.04
PTCHD4Q6ZW05 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTCHD4Q6ZW05 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PTCHD4Q6ZW05 AL157400.5-201ENST00000507624 621 ntBASIC21.52■■□□□ 1.04
PTCHD4Q6ZW05 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.52■■□□□ 1.04
PTCHD4Q6ZW05 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
PTCHD4Q6ZW05 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
PTCHD4Q6ZW05 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.52■■□□□ 1.03
PTCHD4Q6ZW05 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD4Q6ZW05 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD4Q6ZW05 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.51■■□□□ 1.03
PTCHD4Q6ZW05 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD4Q6ZW05 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD4Q6ZW05 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
PTCHD4Q6ZW05 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD4Q6ZW05 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
PTCHD4Q6ZW05 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD4Q6ZW05 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.51■■□□□ 1.03
PTCHD4Q6ZW05 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
PTCHD4Q6ZW05 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD4Q6ZW05 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD4Q6ZW05 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD4Q6ZW05 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTCHD4Q6ZW05 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTCHD4Q6ZW05 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTCHD4Q6ZW05 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.5■■□□□ 1.03
PTCHD4Q6ZW05 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
PTCHD4Q6ZW05 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTCHD4Q6ZW05 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.5■■□□□ 1.03
PTCHD4Q6ZW05 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTCHD4Q6ZW05 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.5■■□□□ 1.03
PTCHD4Q6ZW05 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
PTCHD4Q6ZW05 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.49■■□□□ 1.03
PTCHD4Q6ZW05 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.49■■□□□ 1.03
PTCHD4Q6ZW05 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD4Q6ZW05 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD4Q6ZW05 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.49■■□□□ 1.03
PTCHD4Q6ZW05 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD4Q6ZW05 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD4Q6ZW05 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD4Q6ZW05 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms