Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1BO60663 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1BO60663 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1BO60663 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1BO60663 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.67■□□□□ 0.9
LMX1BO60663 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1BO60663 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.67■□□□□ 0.9
LMX1BO60663 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.67■□□□□ 0.9
LMX1BO60663 AC009831.1-201ENST00000580420 1582 ntBASIC20.67■□□□□ 0.9
LMX1BO60663 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1BO60663 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1BO60663 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1BO60663 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1BO60663 AC025884.2-201ENST00000553429 711 ntBASIC20.66■□□□□ 0.9
LMX1BO60663 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1BO60663 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1BO60663 SMPD5-203ENST00000639008 1464 ntBASIC20.66■□□□□ 0.9
LMX1BO60663 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.66■□□□□ 0.9
LMX1BO60663 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.66■□□□□ 0.9
LMX1BO60663 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
LMX1BO60663 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
LMX1BO60663 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.66■□□□□ 0.9
LMX1BO60663 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1BO60663 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
LMX1BO60663 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LMX1BO60663 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
LMX1BO60663 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LMX1BO60663 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LMX1BO60663 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LMX1BO60663 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LMX1BO60663 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LMX1BO60663 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LMX1BO60663 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
LMX1BO60663 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.64■□□□□ 0.9
LMX1BO60663 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LMX1BO60663 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LMX1BO60663 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1BO60663 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1BO60663 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1BO60663 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1BO60663 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1BO60663 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.64■□□□□ 0.89
LMX1BO60663 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1BO60663 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
LMX1BO60663 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
LMX1BO60663 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LMX1BO60663 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LMX1BO60663 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LMX1BO60663 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.63■□□□□ 0.89
LMX1BO60663 LINC01124-201ENST00000409786 2117 ntBASIC20.62■□□□□ 0.89
LMX1BO60663 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LMX1BO60663 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LMX1BO60663 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.62■□□□□ 0.89
LMX1BO60663 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.62■□□□□ 0.89
LMX1BO60663 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
LMX1BO60663 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LMX1BO60663 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LMX1BO60663 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
LMX1BO60663 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LMX1BO60663 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LMX1BO60663 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.62■□□□□ 0.89
LMX1BO60663 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.62■□□□□ 0.89
LMX1BO60663 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1BO60663 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.61■□□□□ 0.89
LMX1BO60663 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
LMX1BO60663 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
LMX1BO60663 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1BO60663 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1BO60663 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1BO60663 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1BO60663 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.61■□□□□ 0.89
LMX1BO60663 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
LMX1BO60663 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.61■□□□□ 0.89
LMX1BO60663 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1BO60663 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
LMX1BO60663 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.61■□□□□ 0.89
LMX1BO60663 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.61■□□□□ 0.89
LMX1BO60663 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1BO60663 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LMX1BO60663 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
LMX1BO60663 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.6■□□□□ 0.89
LMX1BO60663 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LMX1BO60663 AL035685.1-201ENST00000636663 812 ntBASIC20.6■□□□□ 0.89
LMX1BO60663 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LMX1BO60663 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LMX1BO60663 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.59■□□□□ 0.89
LMX1BO60663 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
LMX1BO60663 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.59■□□□□ 0.89
LMX1BO60663 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LMX1BO60663 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LMX1BO60663 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LMX1BO60663 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
LMX1BO60663 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LMX1BO60663 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.58■□□□□ 0.89
LMX1BO60663 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LMX1BO60663 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LMX1BO60663 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LMX1BO60663 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LMX1BO60663 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LMX1BO60663 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms