Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CHML-205ENST00000638160 705 ntTSL 3 BASIC18.94■□□□□ 0.62
HMGB3O15347 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HMGB3O15347 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGB3O15347 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB3O15347 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB3O15347 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
HMGB3O15347 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGB3O15347 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGB3O15347 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
HMGB3O15347 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGB3O15347 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.92■□□□□ 0.62
HMGB3O15347 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGB3O15347 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB3O15347 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB3O15347 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB3O15347 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGB3O15347 LINC01124-201ENST00000409786 2117 ntBASIC18.92■□□□□ 0.62
HMGB3O15347 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
HMGB3O15347 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB3O15347 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB3O15347 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB3O15347 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB3O15347 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB3O15347 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC18.91■□□□□ 0.62
HMGB3O15347 AC110285.7-201ENST00000624417 1536 ntBASIC18.9■□□□□ 0.62
HMGB3O15347 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB3O15347 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC18.9■□□□□ 0.62
HMGB3O15347 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB3O15347 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB3O15347 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC18.9■□□□□ 0.62
HMGB3O15347 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HMGB3O15347 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB3O15347 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB3O15347 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB3O15347 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB3O15347 AC005559.1-201ENST00000589661 871 ntBASIC18.89■□□□□ 0.61
HMGB3O15347 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
HMGB3O15347 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.89■□□□□ 0.61
HMGB3O15347 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB3O15347 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB3O15347 AC096887.2-201ENST00000623443 1957 ntBASIC18.88■□□□□ 0.61
HMGB3O15347 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB3O15347 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
HMGB3O15347 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGB3O15347 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB3O15347 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
HMGB3O15347 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB3O15347 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB3O15347 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB3O15347 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB3O15347 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
HMGB3O15347 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB3O15347 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC18.87■□□□□ 0.61
HMGB3O15347 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB3O15347 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB3O15347 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB3O15347 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
HMGB3O15347 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB3O15347 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
HMGB3O15347 AC012676.1-201ENST00000574705 1949 ntBASIC18.86■□□□□ 0.61
HMGB3O15347 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB3O15347 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB3O15347 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB3O15347 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
HMGB3O15347 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC18.86■□□□□ 0.61
HMGB3O15347 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
HMGB3O15347 PEX7-203ENST00000541292 945 ntTSL 5 BASIC18.86■□□□□ 0.61
HMGB3O15347 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB3O15347 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB3O15347 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB3O15347 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
HMGB3O15347 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
HMGB3O15347 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HMGB3O15347 AC068473.5-201ENST00000616428 2072 ntBASIC18.85■□□□□ 0.61
HMGB3O15347 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB3O15347 CALM3-209ENST00000597743 577 ntTSL 4 BASIC18.85■□□□□ 0.61
HMGB3O15347 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HMGB3O15347 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB3O15347 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB3O15347 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB3O15347 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB3O15347 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB3O15347 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGB3O15347 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGB3O15347 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB3O15347 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
HMGB3O15347 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HMGB3O15347 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB3O15347 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGB3O15347 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB3O15347 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB3O15347 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HMGB3O15347 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB3O15347 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.61
HMGB3O15347 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HMGB3O15347 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB3O15347 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC18.83■□□□□ 0.6
HMGB3O15347 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB3O15347 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB3O15347 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms