Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 AL359258.2-201ENST00000564063 1566 ntBASIC22.17■■□□□ 1.14
TCRBV3S1A0A5B6 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
TCRBV3S1A0A5B6 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
TCRBV3S1A0A5B6 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
TCRBV3S1A0A5B6 AC021231.2-201ENST00000594613 730 ntBASIC22.17■■□□□ 1.14
TCRBV3S1A0A5B6 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TCRBV3S1A0A5B6 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.17■■□□□ 1.14
TCRBV3S1A0A5B6 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.17■■□□□ 1.14
TCRBV3S1A0A5B6 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TCRBV3S1A0A5B6 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TCRBV3S1A0A5B6 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TCRBV3S1A0A5B6 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TCRBV3S1A0A5B6 AP006261.1-201ENST00000584783 668 ntBASIC22.16■■□□□ 1.14
TCRBV3S1A0A5B6 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TCRBV3S1A0A5B6 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TCRBV3S1A0A5B6 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TCRBV3S1A0A5B6 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC22.15■■□□□ 1.14
TCRBV3S1A0A5B6 AC148477.6-201ENST00000623746 465 ntBASIC22.15■■□□□ 1.14
TCRBV3S1A0A5B6 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.15■■□□□ 1.14
TCRBV3S1A0A5B6 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
TCRBV3S1A0A5B6 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
TCRBV3S1A0A5B6 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
TCRBV3S1A0A5B6 MIR6089-201ENST00000616698 64 ntBASIC22.14■■□□□ 1.13
TCRBV3S1A0A5B6 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
TCRBV3S1A0A5B6 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TCRBV3S1A0A5B6 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
TCRBV3S1A0A5B6 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
TCRBV3S1A0A5B6 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.12■■□□□ 1.13
TCRBV3S1A0A5B6 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
TCRBV3S1A0A5B6 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TCRBV3S1A0A5B6 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC22.12■■□□□ 1.13
TCRBV3S1A0A5B6 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TCRBV3S1A0A5B6 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TCRBV3S1A0A5B6 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
TCRBV3S1A0A5B6 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.12■■□□□ 1.13
TCRBV3S1A0A5B6 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TCRBV3S1A0A5B6 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
TCRBV3S1A0A5B6 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
TCRBV3S1A0A5B6 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TCRBV3S1A0A5B6 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
TCRBV3S1A0A5B6 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
TCRBV3S1A0A5B6 AC008813.1-201ENST00000536597 885 ntBASIC22.11■■□□□ 1.13
TCRBV3S1A0A5B6 CHML-204ENST00000638121 920 ntTSL 2 BASIC22.11■■□□□ 1.13
TCRBV3S1A0A5B6 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TCRBV3S1A0A5B6 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TCRBV3S1A0A5B6 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TCRBV3S1A0A5B6 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TCRBV3S1A0A5B6 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TCRBV3S1A0A5B6 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC22.1■■□□□ 1.13
TCRBV3S1A0A5B6 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TCRBV3S1A0A5B6 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
TCRBV3S1A0A5B6 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
TCRBV3S1A0A5B6 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
TCRBV3S1A0A5B6 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TCRBV3S1A0A5B6 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC22.1■■□□□ 1.13
TCRBV3S1A0A5B6 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC22.1■■□□□ 1.13
TCRBV3S1A0A5B6 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC22.09■■□□□ 1.13
TCRBV3S1A0A5B6 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TCRBV3S1A0A5B6 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TCRBV3S1A0A5B6 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TCRBV3S1A0A5B6 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
TCRBV3S1A0A5B6 AC044849.2-201ENST00000606596 710 ntBASIC22.09■■□□□ 1.13
TCRBV3S1A0A5B6 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TCRBV3S1A0A5B6 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
TCRBV3S1A0A5B6 AL117328.2-201ENST00000624617 1940 ntBASIC22.09■■□□□ 1.13
TCRBV3S1A0A5B6 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.09■■□□□ 1.13
TCRBV3S1A0A5B6 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TCRBV3S1A0A5B6 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TCRBV3S1A0A5B6 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
TCRBV3S1A0A5B6 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
TCRBV3S1A0A5B6 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TCRBV3S1A0A5B6 NRG1-221ENST00000614767 762 ntTSL 5 BASIC22.08■■□□□ 1.13
TCRBV3S1A0A5B6 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
TCRBV3S1A0A5B6 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
TCRBV3S1A0A5B6 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
TCRBV3S1A0A5B6 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
TCRBV3S1A0A5B6 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
TCRBV3S1A0A5B6 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TCRBV3S1A0A5B6 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TCRBV3S1A0A5B6 BOD1-206ENST00000480951 814 ntTSL 2 BASIC22.07■■□□□ 1.12
TCRBV3S1A0A5B6 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TCRBV3S1A0A5B6 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TCRBV3S1A0A5B6 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
TCRBV3S1A0A5B6 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TCRBV3S1A0A5B6 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TCRBV3S1A0A5B6 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
TCRBV3S1A0A5B6 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC22.06■■□□□ 1.12
TCRBV3S1A0A5B6 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
TCRBV3S1A0A5B6 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC22.06■■□□□ 1.12
TCRBV3S1A0A5B6 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TCRBV3S1A0A5B6 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TCRBV3S1A0A5B6 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC22.06■■□□□ 1.12
TCRBV3S1A0A5B6 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.06■■□□□ 1.12
TCRBV3S1A0A5B6 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TCRBV3S1A0A5B6 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
TCRBV3S1A0A5B6 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
TCRBV3S1A0A5B6 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
TCRBV3S1A0A5B6 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
TCRBV3S1A0A5B6 GALC-202ENST00000393568 2054 ntTSL 2 BASIC22.05■■□□□ 1.12
TCRBV3S1A0A5B6 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms