Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.37■■□□□ 1.81
NOD1Q9Y239 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
NOD1Q9Y239 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
NOD1Q9Y239 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.37■■□□□ 1.81
NOD1Q9Y239 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NOD1Q9Y239 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NOD1Q9Y239 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.37■■□□□ 1.81
NOD1Q9Y239 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.37■■□□□ 1.81
NOD1Q9Y239 MTDHP2-201ENST00000601468 714 ntBASIC26.37■■□□□ 1.81
NOD1Q9Y239 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.36■■□□□ 1.81
NOD1Q9Y239 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC26.36■■□□□ 1.81
NOD1Q9Y239 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
NOD1Q9Y239 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NOD1Q9Y239 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NOD1Q9Y239 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.35■■□□□ 1.81
NOD1Q9Y239 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
NOD1Q9Y239 AC131281.2-201ENST00000520478 145 ntBASIC26.35■■□□□ 1.81
NOD1Q9Y239 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC26.35■■□□□ 1.81
NOD1Q9Y239 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC26.35■■□□□ 1.81
NOD1Q9Y239 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NOD1Q9Y239 AC011551.1-201ENST00000614101 683 ntBASIC26.35■■□□□ 1.81
NOD1Q9Y239 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
NOD1Q9Y239 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.35■■□□□ 1.81
NOD1Q9Y239 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NOD1Q9Y239 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
NOD1Q9Y239 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NOD1Q9Y239 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NOD1Q9Y239 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
NOD1Q9Y239 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NOD1Q9Y239 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.34■■□□□ 1.81
NOD1Q9Y239 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NOD1Q9Y239 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC26.33■■□□□ 1.81
NOD1Q9Y239 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC26.33■■□□□ 1.81
NOD1Q9Y239 AL136116.3-201ENST00000402907 1138 ntBASIC26.33■■□□□ 1.81
NOD1Q9Y239 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC26.33■■□□□ 1.81
NOD1Q9Y239 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.32■■□□□ 1.8
NOD1Q9Y239 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
NOD1Q9Y239 MIR638-201ENST00000385237 100 ntBASIC26.32■■□□□ 1.8
NOD1Q9Y239 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
NOD1Q9Y239 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC26.32■■□□□ 1.8
NOD1Q9Y239 AL139246.5-201ENST00000606645 996 ntBASIC26.32■■□□□ 1.8
NOD1Q9Y239 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
NOD1Q9Y239 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
NOD1Q9Y239 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.32■■□□□ 1.8
NOD1Q9Y239 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
NOD1Q9Y239 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NOD1Q9Y239 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC26.31■■□□□ 1.8
NOD1Q9Y239 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC26.31■■□□□ 1.8
NOD1Q9Y239 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.31■■□□□ 1.8
NOD1Q9Y239 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC26.3■■□□□ 1.8
NOD1Q9Y239 MIR6724-1-201ENST00000616420 92 ntBASIC26.3■■□□□ 1.8
NOD1Q9Y239 MIR6724-2-201ENST00000616483 92 ntBASIC26.3■■□□□ 1.8
NOD1Q9Y239 MIR6724-4-201ENST00000617390 92 ntBASIC26.3■■□□□ 1.8
NOD1Q9Y239 MIR6724-3-201ENST00000622482 92 ntBASIC26.3■■□□□ 1.8
NOD1Q9Y239 AL117332.1-201ENST00000622628 974 ntBASIC26.3■■□□□ 1.8
NOD1Q9Y239 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NOD1Q9Y239 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NOD1Q9Y239 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
NOD1Q9Y239 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
NOD1Q9Y239 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
NOD1Q9Y239 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.29■■□□□ 1.8
NOD1Q9Y239 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC26.29■■□□□ 1.8
NOD1Q9Y239 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.29■■□□□ 1.8
NOD1Q9Y239 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.29■■□□□ 1.8
NOD1Q9Y239 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC26.29■■□□□ 1.8
NOD1Q9Y239 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
NOD1Q9Y239 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.29■■□□□ 1.8
NOD1Q9Y239 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NOD1Q9Y239 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NOD1Q9Y239 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NOD1Q9Y239 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC26.28■■□□□ 1.8
NOD1Q9Y239 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NOD1Q9Y239 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
NOD1Q9Y239 AL356740.2-201ENST00000601559 647 ntBASIC26.27■■□□□ 1.8
NOD1Q9Y239 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NOD1Q9Y239 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.26■■□□□ 1.79
NOD1Q9Y239 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NOD1Q9Y239 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.26■■□□□ 1.79
NOD1Q9Y239 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
NOD1Q9Y239 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
NOD1Q9Y239 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC26.25■■□□□ 1.79
NOD1Q9Y239 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC26.25■■□□□ 1.79
NOD1Q9Y239 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NOD1Q9Y239 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
NOD1Q9Y239 TK2-202ENST00000417693 1046 ntTSL 2 BASIC26.25■■□□□ 1.79
NOD1Q9Y239 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC26.25■■□□□ 1.79
NOD1Q9Y239 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.25■■□□□ 1.79
NOD1Q9Y239 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
NOD1Q9Y239 MIR3621-201ENST00000580529 85 ntBASIC26.25■■□□□ 1.79
NOD1Q9Y239 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
NOD1Q9Y239 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
NOD1Q9Y239 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NOD1Q9Y239 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC26.24■■□□□ 1.79
NOD1Q9Y239 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
NOD1Q9Y239 SENP5-202ENST00000419026 973 ntTSL 3 BASIC26.24■■□□□ 1.79
NOD1Q9Y239 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC26.24■■□□□ 1.79
NOD1Q9Y239 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
NOD1Q9Y239 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NOD1Q9Y239 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC26.24■■□□□ 1.79
NOD1Q9Y239 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.24■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms