Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.48
COL17A1Q9UMD9 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.48
COL17A1Q9UMD9 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC36.81■■■■□ 3.48
COL17A1Q9UMD9 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC36.81■■■■□ 3.48
COL17A1Q9UMD9 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC36.81■■■■□ 3.48
COL17A1Q9UMD9 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC36.8■■■■□ 3.48
COL17A1Q9UMD9 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC36.8■■■■□ 3.48
COL17A1Q9UMD9 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC36.79■■■■□ 3.48
COL17A1Q9UMD9 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC36.79■■■■□ 3.48
COL17A1Q9UMD9 AF213884.3-201ENST00000563833 479 ntBASIC36.79■■■■□ 3.48
COL17A1Q9UMD9 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC36.79■■■■□ 3.48
COL17A1Q9UMD9 ABCB10P3-201ENST00000561950 2166 ntBASIC36.79■■■■□ 3.48
COL17A1Q9UMD9 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC36.78■■■■□ 3.48
COL17A1Q9UMD9 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC36.78■■■■□ 3.48
COL17A1Q9UMD9 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC36.78■■■■□ 3.48
COL17A1Q9UMD9 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC36.78■■■■□ 3.48
COL17A1Q9UMD9 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC36.78■■■■□ 3.48
COL17A1Q9UMD9 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC36.78■■■■□ 3.48
COL17A1Q9UMD9 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC36.78■■■■□ 3.48
COL17A1Q9UMD9 MIR939-201ENST00000401314 82 ntBASIC36.77■■■■□ 3.48
COL17A1Q9UMD9 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC36.77■■■■□ 3.48
COL17A1Q9UMD9 RBM38-205ENST00000440234 686 ntTSL 2 BASIC36.77■■■■□ 3.48
COL17A1Q9UMD9 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC36.77■■■■□ 3.48
COL17A1Q9UMD9 CLTA-210ENST00000540080 989 ntTSL 2 BASIC36.77■■■■□ 3.48
COL17A1Q9UMD9 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC36.77■■■■□ 3.48
COL17A1Q9UMD9 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC36.77■■■■□ 3.48
COL17A1Q9UMD9 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC36.76■■■■□ 3.48
COL17A1Q9UMD9 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC36.76■■■■□ 3.48
COL17A1Q9UMD9 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC36.75■■■■□ 3.47
COL17A1Q9UMD9 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC36.75■■■■□ 3.47
COL17A1Q9UMD9 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC36.75■■■■□ 3.47
COL17A1Q9UMD9 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC36.75■■■■□ 3.47
COL17A1Q9UMD9 ST7-202ENST00000323984 2142 ntTSL 5 BASIC36.75■■■■□ 3.47
COL17A1Q9UMD9 ST7-207ENST00000393449 2127 ntTSL 5 BASIC36.75■■■■□ 3.47
COL17A1Q9UMD9 STOX2-205ENST00000513034 807 ntTSL 3 BASIC36.75■■■■□ 3.47
COL17A1Q9UMD9 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC36.75■■■■□ 3.47
COL17A1Q9UMD9 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC36.74■■■■□ 3.47
COL17A1Q9UMD9 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC36.74■■■■□ 3.47
COL17A1Q9UMD9 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC36.74■■■■□ 3.47
COL17A1Q9UMD9 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC36.73■■■■□ 3.47
COL17A1Q9UMD9 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC36.73■■■■□ 3.47
COL17A1Q9UMD9 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC36.72■■■■□ 3.47
COL17A1Q9UMD9 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC36.72■■■■□ 3.47
COL17A1Q9UMD9 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC36.72■■■■□ 3.47
COL17A1Q9UMD9 AP001330.3-201ENST00000520123 633 ntBASIC36.72■■■■□ 3.47
COL17A1Q9UMD9 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC36.72■■■■□ 3.47
COL17A1Q9UMD9 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC36.71■■■■□ 3.47
COL17A1Q9UMD9 TFPT-201ENST00000391757 774 ntTSL 5 BASIC36.71■■■■□ 3.47
COL17A1Q9UMD9 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC36.71■■■■□ 3.47
COL17A1Q9UMD9 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC36.71■■■■□ 3.47
COL17A1Q9UMD9 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC36.71■■■■□ 3.47
COL17A1Q9UMD9 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC36.7■■■■□ 3.47
COL17A1Q9UMD9 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC36.69■■■■□ 3.46
COL17A1Q9UMD9 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC36.69■■■■□ 3.46
COL17A1Q9UMD9 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC36.69■■■■□ 3.46
COL17A1Q9UMD9 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC36.69■■■■□ 3.46
COL17A1Q9UMD9 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC36.68■■■■□ 3.46
COL17A1Q9UMD9 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC36.68■■■■□ 3.46
COL17A1Q9UMD9 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC36.68■■■■□ 3.46
COL17A1Q9UMD9 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC36.67■■■■□ 3.46
COL17A1Q9UMD9 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC36.67■■■■□ 3.46
COL17A1Q9UMD9 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC36.67■■■■□ 3.46
COL17A1Q9UMD9 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC36.67■■■■□ 3.46
COL17A1Q9UMD9 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC36.67■■■■□ 3.46
COL17A1Q9UMD9 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC36.66■■■■□ 3.46
COL17A1Q9UMD9 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC36.66■■■■□ 3.46
COL17A1Q9UMD9 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC36.64■■■■□ 3.46
COL17A1Q9UMD9 DENND3-207ENST00000518347 850 ntTSL 2 BASIC36.64■■■■□ 3.46
COL17A1Q9UMD9 IKBKGP1-201ENST00000612193 1073 ntBASIC36.64■■■■□ 3.46
COL17A1Q9UMD9 GRAMD4P4-201ENST00000613563 1115 ntBASIC36.64■■■■□ 3.46
COL17A1Q9UMD9 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC36.64■■■■□ 3.46
COL17A1Q9UMD9 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC36.64■■■■□ 3.46
COL17A1Q9UMD9 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC36.63■■■■□ 3.45
COL17A1Q9UMD9 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC36.63■■■■□ 3.45
COL17A1Q9UMD9 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC36.63■■■■□ 3.45
COL17A1Q9UMD9 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC36.63■■■■□ 3.45
COL17A1Q9UMD9 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC36.63■■■■□ 3.45
COL17A1Q9UMD9 CLTA-206ENST00000466396 695 ntTSL 2 BASIC36.62■■■■□ 3.45
COL17A1Q9UMD9 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC36.62■■■■□ 3.45
COL17A1Q9UMD9 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC36.62■■■■□ 3.45
COL17A1Q9UMD9 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC36.62■■■■□ 3.45
COL17A1Q9UMD9 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC36.61■■■■□ 3.45
COL17A1Q9UMD9 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC36.61■■■■□ 3.45
COL17A1Q9UMD9 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC36.61■■■■□ 3.45
COL17A1Q9UMD9 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC36.61■■■■□ 3.45
COL17A1Q9UMD9 GAK-223ENST00000628912 497 ntTSL 5 BASIC36.61■■■■□ 3.45
COL17A1Q9UMD9 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC36.6■■■■□ 3.45
COL17A1Q9UMD9 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC36.6■■■■□ 3.45
COL17A1Q9UMD9 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC36.6■■■■□ 3.45
COL17A1Q9UMD9 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC36.6■■■■□ 3.45
COL17A1Q9UMD9 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC36.6■■■■□ 3.45
COL17A1Q9UMD9 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC36.6■■■■□ 3.45
COL17A1Q9UMD9 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC36.59■■■■□ 3.45
COL17A1Q9UMD9 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC36.59■■■■□ 3.45
COL17A1Q9UMD9 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC36.59■■■■□ 3.45
COL17A1Q9UMD9 AC011551.1-201ENST00000614101 683 ntBASIC36.59■■■■□ 3.45
COL17A1Q9UMD9 AF131216.4-201ENST00000638924 1588 ntBASIC36.59■■■■□ 3.45
COL17A1Q9UMD9 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC36.59■■■■□ 3.45
COL17A1Q9UMD9 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC36.58■■■■□ 3.45
COL17A1Q9UMD9 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC36.57■■■■□ 3.45
Retrieved 100 of 98,524 protein–RNA pairs in 137.2 ms