Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF540Q8NDQ6 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF540Q8NDQ6 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.8■■□□□ 1.08
ZNF540Q8NDQ6 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF540Q8NDQ6 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF540Q8NDQ6 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF540Q8NDQ6 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
ZNF540Q8NDQ6 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.8■■□□□ 1.08
ZNF540Q8NDQ6 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.8■■□□□ 1.08
ZNF540Q8NDQ6 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.8■■□□□ 1.08
ZNF540Q8NDQ6 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.8■■□□□ 1.08
ZNF540Q8NDQ6 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF540Q8NDQ6 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF540Q8NDQ6 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
ZNF540Q8NDQ6 AP003733.4-201ENST00000623785 1697 ntBASIC21.79■■□□□ 1.08
ZNF540Q8NDQ6 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.79■■□□□ 1.08
ZNF540Q8NDQ6 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.79■■□□□ 1.08
ZNF540Q8NDQ6 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.79■■□□□ 1.08
ZNF540Q8NDQ6 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF540Q8NDQ6 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF540Q8NDQ6 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF540Q8NDQ6 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF540Q8NDQ6 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF540Q8NDQ6 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.78■■□□□ 1.08
ZNF540Q8NDQ6 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF540Q8NDQ6 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
ZNF540Q8NDQ6 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.78■■□□□ 1.08
ZNF540Q8NDQ6 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.78■■□□□ 1.08
ZNF540Q8NDQ6 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.78■■□□□ 1.08
ZNF540Q8NDQ6 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF540Q8NDQ6 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
ZNF540Q8NDQ6 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF540Q8NDQ6 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.78■■□□□ 1.08
ZNF540Q8NDQ6 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF540Q8NDQ6 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.77■■□□□ 1.08
ZNF540Q8NDQ6 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF540Q8NDQ6 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF540Q8NDQ6 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.07
ZNF540Q8NDQ6 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
ZNF540Q8NDQ6 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF540Q8NDQ6 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.76■■□□□ 1.07
ZNF540Q8NDQ6 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
ZNF540Q8NDQ6 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF540Q8NDQ6 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF540Q8NDQ6 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF540Q8NDQ6 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
ZNF540Q8NDQ6 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.75■■□□□ 1.07
ZNF540Q8NDQ6 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF540Q8NDQ6 AC079834.2-201ENST00000609776 1949 ntBASIC21.74■■□□□ 1.07
ZNF540Q8NDQ6 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF540Q8NDQ6 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF540Q8NDQ6 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF540Q8NDQ6 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF540Q8NDQ6 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF540Q8NDQ6 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF540Q8NDQ6 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF540Q8NDQ6 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF540Q8NDQ6 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF540Q8NDQ6 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF540Q8NDQ6 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF540Q8NDQ6 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF540Q8NDQ6 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
ZNF540Q8NDQ6 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
ZNF540Q8NDQ6 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.73■■□□□ 1.07
ZNF540Q8NDQ6 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.73■■□□□ 1.07
ZNF540Q8NDQ6 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF540Q8NDQ6 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF540Q8NDQ6 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF540Q8NDQ6 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.72■■□□□ 1.07
ZNF540Q8NDQ6 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.72■■□□□ 1.07
ZNF540Q8NDQ6 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.72■■□□□ 1.07
ZNF540Q8NDQ6 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF540Q8NDQ6 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF540Q8NDQ6 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF540Q8NDQ6 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.72■■□□□ 1.07
ZNF540Q8NDQ6 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF540Q8NDQ6 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.71■■□□□ 1.07
ZNF540Q8NDQ6 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF540Q8NDQ6 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF540Q8NDQ6 LINC00543-201ENST00000567234 1845 ntBASIC21.71■■□□□ 1.07
ZNF540Q8NDQ6 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
ZNF540Q8NDQ6 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF540Q8NDQ6 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF540Q8NDQ6 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.7■■□□□ 1.06
ZNF540Q8NDQ6 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF540Q8NDQ6 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.7■■□□□ 1.06
ZNF540Q8NDQ6 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF540Q8NDQ6 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.7■■□□□ 1.06
ZNF540Q8NDQ6 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
ZNF540Q8NDQ6 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF540Q8NDQ6 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.69■■□□□ 1.06
ZNF540Q8NDQ6 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF540Q8NDQ6 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF540Q8NDQ6 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.69■■□□□ 1.06
ZNF540Q8NDQ6 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF540Q8NDQ6 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.69■■□□□ 1.06
ZNF540Q8NDQ6 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF540Q8NDQ6 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF540Q8NDQ6 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
ZNF540Q8NDQ6 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms