Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 TK2-216ENST00000564917 1156 ntTSL 3 BASIC23.72■■□□□ 1.39
LRRK1Q38SD2 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LRRK1Q38SD2 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LRRK1Q38SD2 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
LRRK1Q38SD2 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LRRK1Q38SD2 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
LRRK1Q38SD2 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC23.72■■□□□ 1.39
LRRK1Q38SD2 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
LRRK1Q38SD2 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
LRRK1Q38SD2 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
LRRK1Q38SD2 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
LRRK1Q38SD2 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LRRK1Q38SD2 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC23.71■■□□□ 1.39
LRRK1Q38SD2 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC23.71■■□□□ 1.39
LRRK1Q38SD2 AC097639.1-201ENST00000565519 1891 ntBASIC23.71■■□□□ 1.39
LRRK1Q38SD2 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LRRK1Q38SD2 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
LRRK1Q38SD2 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LRRK1Q38SD2 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.7■■□□□ 1.38
LRRK1Q38SD2 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.7■■□□□ 1.38
LRRK1Q38SD2 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
LRRK1Q38SD2 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.7■■□□□ 1.38
LRRK1Q38SD2 MIR4281-201ENST00000580852 62 ntBASIC23.7■■□□□ 1.38
LRRK1Q38SD2 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.7■■□□□ 1.38
LRRK1Q38SD2 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.7■■□□□ 1.38
LRRK1Q38SD2 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
LRRK1Q38SD2 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LRRK1Q38SD2 YBX1P4-201ENST00000392794 808 ntBASIC23.69■■□□□ 1.38
LRRK1Q38SD2 TRIR-205ENST00000592273 783 ntTSL 3 BASIC23.69■■□□□ 1.38
LRRK1Q38SD2 AL035685.1-201ENST00000636663 812 ntBASIC23.69■■□□□ 1.38
LRRK1Q38SD2 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LRRK1Q38SD2 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
LRRK1Q38SD2 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
LRRK1Q38SD2 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
LRRK1Q38SD2 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LRRK1Q38SD2 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
LRRK1Q38SD2 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
LRRK1Q38SD2 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
LRRK1Q38SD2 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
LRRK1Q38SD2 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.68■■□□□ 1.38
LRRK1Q38SD2 PRTG-204ENST00000561292 833 ntTSL 3 BASIC23.68■■□□□ 1.38
LRRK1Q38SD2 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
LRRK1Q38SD2 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.67■■□□□ 1.38
LRRK1Q38SD2 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
LRRK1Q38SD2 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
LRRK1Q38SD2 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
LRRK1Q38SD2 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
LRRK1Q38SD2 LONRF2P2-201ENST00000439212 571 ntBASIC23.67■■□□□ 1.38
LRRK1Q38SD2 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
LRRK1Q38SD2 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.67■■□□□ 1.38
LRRK1Q38SD2 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
LRRK1Q38SD2 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
LRRK1Q38SD2 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC23.66■■□□□ 1.38
LRRK1Q38SD2 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
LRRK1Q38SD2 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
LRRK1Q38SD2 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
LRRK1Q38SD2 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.65■■□□□ 1.38
LRRK1Q38SD2 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
LRRK1Q38SD2 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.37
LRRK1Q38SD2 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
LRRK1Q38SD2 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
LRRK1Q38SD2 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC23.64■■□□□ 1.37
LRRK1Q38SD2 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
LRRK1Q38SD2 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
LRRK1Q38SD2 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
LRRK1Q38SD2 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC23.64■■□□□ 1.37
LRRK1Q38SD2 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
LRRK1Q38SD2 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.63■■□□□ 1.37
LRRK1Q38SD2 DUSP8P4-201ENST00000399538 1761 ntBASIC23.63■■□□□ 1.37
LRRK1Q38SD2 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
LRRK1Q38SD2 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
LRRK1Q38SD2 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC23.63■■□□□ 1.37
LRRK1Q38SD2 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
LRRK1Q38SD2 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LRRK1Q38SD2 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LRRK1Q38SD2 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LRRK1Q38SD2 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
LRRK1Q38SD2 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
LRRK1Q38SD2 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LRRK1Q38SD2 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LRRK1Q38SD2 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
LRRK1Q38SD2 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.61■■□□□ 1.37
LRRK1Q38SD2 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
LRRK1Q38SD2 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.61■■□□□ 1.37
LRRK1Q38SD2 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
LRRK1Q38SD2 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC23.6■■□□□ 1.37
LRRK1Q38SD2 AL031848.2-201ENST00000607670 837 ntBASIC23.6■■□□□ 1.37
LRRK1Q38SD2 AC091060.1-201ENST00000623524 1766 ntBASIC23.59■■□□□ 1.37
LRRK1Q38SD2 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
LRRK1Q38SD2 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LRRK1Q38SD2 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
LRRK1Q38SD2 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
LRRK1Q38SD2 HES6-204ENST00000409182 863 ntTSL 2 BASIC23.59■■□□□ 1.37
LRRK1Q38SD2 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.59■■□□□ 1.37
LRRK1Q38SD2 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
LRRK1Q38SD2 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC23.58■■□□□ 1.37
LRRK1Q38SD2 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC23.58■■□□□ 1.37
LRRK1Q38SD2 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC23.58■■□□□ 1.37
LRRK1Q38SD2 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
LRRK1Q38SD2 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms