Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.56■□□□□ 0.88
ABCA4P78363 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA4P78363 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
ABCA4P78363 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA4P78363 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.56■□□□□ 0.88
ABCA4P78363 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA4P78363 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA4P78363 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA4P78363 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA4P78363 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.55■□□□□ 0.88
ABCA4P78363 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.55■□□□□ 0.88
ABCA4P78363 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ABCA4P78363 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ABCA4P78363 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ABCA4P78363 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.54■□□□□ 0.88
ABCA4P78363 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
ABCA4P78363 AC005837.3-201ENST00000612163 286 ntBASIC20.54■□□□□ 0.88
ABCA4P78363 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ABCA4P78363 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.54■□□□□ 0.88
ABCA4P78363 TSPY9P-201ENST00000440215 945 ntBASIC20.53■□□□□ 0.88
ABCA4P78363 TSPY11P-201ENST00000442607 1045 ntBASIC20.53■□□□□ 0.88
ABCA4P78363 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA4P78363 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
ABCA4P78363 MIR4466-201ENST00000606121 54 ntBASIC20.53■□□□□ 0.88
ABCA4P78363 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.53■□□□□ 0.88
ABCA4P78363 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA4P78363 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.52■□□□□ 0.88
ABCA4P78363 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.52■□□□□ 0.88
ABCA4P78363 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
ABCA4P78363 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ABCA4P78363 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ABCA4P78363 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.52■□□□□ 0.88
ABCA4P78363 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
ABCA4P78363 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ABCA4P78363 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.52■□□□□ 0.87
ABCA4P78363 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
ABCA4P78363 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ABCA4P78363 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
ABCA4P78363 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
ABCA4P78363 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
ABCA4P78363 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ABCA4P78363 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ABCA4P78363 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
ABCA4P78363 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.5■□□□□ 0.87
ABCA4P78363 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.5■□□□□ 0.87
ABCA4P78363 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.5■□□□□ 0.87
ABCA4P78363 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.5■□□□□ 0.87
ABCA4P78363 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.5■□□□□ 0.87
ABCA4P78363 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ABCA4P78363 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.5■□□□□ 0.87
ABCA4P78363 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.5■□□□□ 0.87
ABCA4P78363 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
ABCA4P78363 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
ABCA4P78363 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ABCA4P78363 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCA4P78363 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.49■□□□□ 0.87
ABCA4P78363 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCA4P78363 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.49■□□□□ 0.87
ABCA4P78363 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
ABCA4P78363 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ABCA4P78363 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCA4P78363 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
ABCA4P78363 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCA4P78363 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
ABCA4P78363 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.48■□□□□ 0.87
ABCA4P78363 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
ABCA4P78363 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
ABCA4P78363 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.48■□□□□ 0.87
ABCA4P78363 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.48■□□□□ 0.87
ABCA4P78363 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.48■□□□□ 0.87
ABCA4P78363 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.48■□□□□ 0.87
ABCA4P78363 AC142472.1-201ENST00000612013 1741 ntBASIC20.48■□□□□ 0.87
ABCA4P78363 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
ABCA4P78363 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ABCA4P78363 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ABCA4P78363 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ABCA4P78363 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ABCA4P78363 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.47■□□□□ 0.87
ABCA4P78363 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ABCA4P78363 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.47■□□□□ 0.87
ABCA4P78363 AL356740.2-201ENST00000601559 647 ntBASIC20.47■□□□□ 0.87
ABCA4P78363 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ABCA4P78363 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ABCA4P78363 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ABCA4P78363 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ABCA4P78363 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ABCA4P78363 AP004609.3-201ENST00000610705 1884 ntBASIC20.46■□□□□ 0.87
ABCA4P78363 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ABCA4P78363 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
ABCA4P78363 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
ABCA4P78363 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ABCA4P78363 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.46■□□□□ 0.87
ABCA4P78363 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
ABCA4P78363 AL136116.3-201ENST00000402907 1138 ntBASIC20.45■□□□□ 0.86
ABCA4P78363 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.45■□□□□ 0.86
ABCA4P78363 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.45■□□□□ 0.86
ABCA4P78363 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.45■□□□□ 0.86
ABCA4P78363 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
ABCA4P78363 AC011551.1-201ENST00000614101 683 ntBASIC20.44■□□□□ 0.86
ABCA4P78363 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms