Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC27.78■■■□□ 2.04
HMGCS2P54868 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
HMGCS2P54868 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
HMGCS2P54868 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
HMGCS2P54868 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
HMGCS2P54868 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC27.76■■■□□ 2.03
HMGCS2P54868 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
HMGCS2P54868 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC27.76■■■□□ 2.03
HMGCS2P54868 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC27.76■■■□□ 2.03
HMGCS2P54868 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC27.76■■■□□ 2.03
HMGCS2P54868 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC27.76■■■□□ 2.03
HMGCS2P54868 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC27.75■■■□□ 2.03
HMGCS2P54868 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC27.75■■■□□ 2.03
HMGCS2P54868 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
HMGCS2P54868 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
HMGCS2P54868 SNAI3-AS1-204ENST00000567997 2048 ntBASIC27.74■■■□□ 2.03
HMGCS2P54868 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
HMGCS2P54868 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC27.74■■■□□ 2.03
HMGCS2P54868 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC27.74■■■□□ 2.03
HMGCS2P54868 AC131281.2-201ENST00000520478 145 ntBASIC27.74■■■□□ 2.03
HMGCS2P54868 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC27.74■■■□□ 2.03
HMGCS2P54868 SHF-208ENST00000560734 1731 ntTSL 3 BASIC27.74■■■□□ 2.03
HMGCS2P54868 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC27.74■■■□□ 2.03
HMGCS2P54868 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC27.74■■■□□ 2.03
HMGCS2P54868 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
HMGCS2P54868 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC27.73■■■□□ 2.03
HMGCS2P54868 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC27.73■■■□□ 2.03
HMGCS2P54868 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC27.73■■■□□ 2.03
HMGCS2P54868 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC27.73■■■□□ 2.03
HMGCS2P54868 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC27.73■■■□□ 2.03
HMGCS2P54868 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
HMGCS2P54868 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC27.72■■■□□ 2.03
HMGCS2P54868 MIR935-201ENST00000401179 91 ntBASIC27.72■■■□□ 2.03
HMGCS2P54868 SRR-208ENST00000576848 588 ntTSL 4 BASIC27.72■■■□□ 2.03
HMGCS2P54868 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
HMGCS2P54868 GAK-223ENST00000628912 497 ntTSL 5 BASIC27.72■■■□□ 2.03
HMGCS2P54868 AC142086.6-201ENST00000621154 1765 ntBASIC27.72■■■□□ 2.03
HMGCS2P54868 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
HMGCS2P54868 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC27.72■■■□□ 2.03
HMGCS2P54868 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC27.71■■■□□ 2.03
HMGCS2P54868 RPP21-222ENST00000433076 577 ntTSL 2 BASIC27.71■■■□□ 2.03
HMGCS2P54868 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC27.71■■■□□ 2.03
HMGCS2P54868 AC010997.5-201ENST00000609182 354 ntBASIC27.71■■■□□ 2.03
HMGCS2P54868 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC27.71■■■□□ 2.03
HMGCS2P54868 AC011551.1-201ENST00000614101 683 ntBASIC27.71■■■□□ 2.03
HMGCS2P54868 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
HMGCS2P54868 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
HMGCS2P54868 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC27.7■■■□□ 2.02
HMGCS2P54868 SENP5-202ENST00000419026 973 ntTSL 3 BASIC27.7■■■□□ 2.02
HMGCS2P54868 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC27.69■■■□□ 2.02
HMGCS2P54868 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
HMGCS2P54868 MIR638-201ENST00000385237 100 ntBASIC27.69■■■□□ 2.02
HMGCS2P54868 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC27.69■■■□□ 2.02
HMGCS2P54868 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
HMGCS2P54868 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC27.68■■■□□ 2.02
HMGCS2P54868 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC27.68■■■□□ 2.02
HMGCS2P54868 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC27.68■■■□□ 2.02
HMGCS2P54868 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC27.68■■■□□ 2.02
HMGCS2P54868 AL117332.1-201ENST00000622628 974 ntBASIC27.68■■■□□ 2.02
HMGCS2P54868 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
HMGCS2P54868 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
HMGCS2P54868 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
HMGCS2P54868 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC27.67■■■□□ 2.02
HMGCS2P54868 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC27.67■■■□□ 2.02
HMGCS2P54868 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC27.67■■■□□ 2.02
HMGCS2P54868 MTDHP2-201ENST00000601468 714 ntBASIC27.67■■■□□ 2.02
HMGCS2P54868 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC27.67■■■□□ 2.02
HMGCS2P54868 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
HMGCS2P54868 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC27.65■■■□□ 2.02
HMGCS2P54868 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC27.65■■■□□ 2.02
HMGCS2P54868 LSM4-201ENST00000252816 986 ntTSL 2 BASIC27.65■■■□□ 2.02
HMGCS2P54868 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
HMGCS2P54868 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
HMGCS2P54868 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC27.65■■■□□ 2.02
HMGCS2P54868 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
HMGCS2P54868 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC27.64■■■□□ 2.02
HMGCS2P54868 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC27.64■■■□□ 2.02
HMGCS2P54868 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
HMGCS2P54868 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
HMGCS2P54868 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
HMGCS2P54868 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC27.64■■■□□ 2.02
HMGCS2P54868 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC27.64■■■□□ 2.02
HMGCS2P54868 AL136116.3-201ENST00000402907 1138 ntBASIC27.64■■■□□ 2.02
HMGCS2P54868 NALT1-201ENST00000429224 738 ntTSL 5 BASIC27.64■■■□□ 2.02
HMGCS2P54868 MIR6724-1-201ENST00000616420 92 ntBASIC27.64■■■□□ 2.02
HMGCS2P54868 MIR6724-2-201ENST00000616483 92 ntBASIC27.64■■■□□ 2.02
HMGCS2P54868 MIR6724-4-201ENST00000617390 92 ntBASIC27.64■■■□□ 2.02
HMGCS2P54868 MIR6724-3-201ENST00000622482 92 ntBASIC27.64■■■□□ 2.02
HMGCS2P54868 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
HMGCS2P54868 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC27.64■■■□□ 2.01
HMGCS2P54868 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC27.64■■■□□ 2.01
HMGCS2P54868 SHF-206ENST00000560471 2499 ntTSL 5 BASIC27.63■■■□□ 2.01
HMGCS2P54868 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC27.63■■■□□ 2.01
HMGCS2P54868 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC27.63■■■□□ 2.01
HMGCS2P54868 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC27.63■■■□□ 2.01
HMGCS2P54868 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
HMGCS2P54868 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
HMGCS2P54868 MIR3621-201ENST00000580529 85 ntBASIC27.63■■■□□ 2.01
HMGCS2P54868 AL139246.5-201ENST00000606645 996 ntBASIC27.63■■■□□ 2.01
HMGCS2P54868 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC27.63■■■□□ 2.01
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms