Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC25.89■■□□□ 1.74
TTC3P53804 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
TTC3P53804 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
TTC3P53804 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
TTC3P53804 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.73
TTC3P53804 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
TTC3P53804 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
TTC3P53804 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.88■■□□□ 1.73
TTC3P53804 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.88■■□□□ 1.73
TTC3P53804 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC25.88■■□□□ 1.73
TTC3P53804 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC25.88■■□□□ 1.73
TTC3P53804 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
TTC3P53804 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC25.87■■□□□ 1.73
TTC3P53804 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
TTC3P53804 TSPY9P-201ENST00000440215 945 ntBASIC25.87■■□□□ 1.73
TTC3P53804 TSPY11P-201ENST00000442607 1045 ntBASIC25.87■■□□□ 1.73
TTC3P53804 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC25.87■■□□□ 1.73
TTC3P53804 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC25.87■■□□□ 1.73
TTC3P53804 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC25.87■■□□□ 1.73
TTC3P53804 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
TTC3P53804 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
TTC3P53804 SRR-208ENST00000576848 588 ntTSL 4 BASIC25.85■■□□□ 1.73
TTC3P53804 AC011551.1-201ENST00000614101 683 ntBASIC25.85■■□□□ 1.73
TTC3P53804 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC25.85■■□□□ 1.73
TTC3P53804 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
TTC3P53804 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC25.85■■□□□ 1.73
TTC3P53804 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
TTC3P53804 MIR638-201ENST00000385237 100 ntBASIC25.85■■□□□ 1.73
TTC3P53804 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC25.85■■□□□ 1.73
TTC3P53804 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC25.85■■□□□ 1.73
TTC3P53804 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC25.85■■□□□ 1.73
TTC3P53804 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC25.84■■□□□ 1.73
TTC3P53804 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
TTC3P53804 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
TTC3P53804 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC25.83■■□□□ 1.73
TTC3P53804 TRIR-202ENST00000588213 841 ntTSL 3 BASIC25.83■■□□□ 1.73
TTC3P53804 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC25.83■■□□□ 1.73
TTC3P53804 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
TTC3P53804 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC25.83■■□□□ 1.72
TTC3P53804 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
TTC3P53804 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
TTC3P53804 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC25.82■■□□□ 1.72
TTC3P53804 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
TTC3P53804 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
TTC3P53804 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC25.82■■□□□ 1.72
TTC3P53804 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
TTC3P53804 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
TTC3P53804 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
TTC3P53804 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
TTC3P53804 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC25.81■■□□□ 1.72
TTC3P53804 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
TTC3P53804 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC25.81■■□□□ 1.72
TTC3P53804 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.81■■□□□ 1.72
TTC3P53804 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC25.8■■□□□ 1.72
TTC3P53804 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
TTC3P53804 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
TTC3P53804 MIR3621-201ENST00000580529 85 ntBASIC25.8■■□□□ 1.72
TTC3P53804 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
TTC3P53804 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC25.8■■□□□ 1.72
TTC3P53804 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC25.8■■□□□ 1.72
TTC3P53804 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
TTC3P53804 AL117332.1-201ENST00000622628 974 ntBASIC25.8■■□□□ 1.72
TTC3P53804 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
TTC3P53804 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
TTC3P53804 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
TTC3P53804 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC25.79■■□□□ 1.72
TTC3P53804 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
TTC3P53804 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.78■■□□□ 1.72
TTC3P53804 MIR6724-1-201ENST00000616420 92 ntBASIC25.78■■□□□ 1.72
TTC3P53804 MIR6724-2-201ENST00000616483 92 ntBASIC25.78■■□□□ 1.72
TTC3P53804 MIR6724-4-201ENST00000617390 92 ntBASIC25.78■■□□□ 1.72
TTC3P53804 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
TTC3P53804 MIR6724-3-201ENST00000622482 92 ntBASIC25.78■■□□□ 1.72
TTC3P53804 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC25.78■■□□□ 1.72
TTC3P53804 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC25.78■■□□□ 1.72
TTC3P53804 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.78■■□□□ 1.72
TTC3P53804 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
TTC3P53804 SHF-208ENST00000560734 1731 ntTSL 3 BASIC25.77■■□□□ 1.72
TTC3P53804 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC25.77■■□□□ 1.72
TTC3P53804 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
TTC3P53804 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
TTC3P53804 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC25.76■■□□□ 1.71
TTC3P53804 AC142086.6-201ENST00000621154 1765 ntBASIC25.76■■□□□ 1.71
TTC3P53804 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC25.76■■□□□ 1.71
TTC3P53804 MIR935-201ENST00000401179 91 ntBASIC25.76■■□□□ 1.71
TTC3P53804 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC25.75■■□□□ 1.71
TTC3P53804 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC25.75■■□□□ 1.71
TTC3P53804 AC110285.6-201ENST00000617652 491 ntBASIC25.75■■□□□ 1.71
TTC3P53804 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC25.75■■□□□ 1.71
TTC3P53804 AC010997.5-201ENST00000609182 354 ntBASIC25.75■■□□□ 1.71
TTC3P53804 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
TTC3P53804 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
TTC3P53804 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
TTC3P53804 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
TTC3P53804 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
TTC3P53804 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
TTC3P53804 QDPR-206ENST00000508623 601 ntTSL 3 BASIC25.74■■□□□ 1.71
TTC3P53804 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
TTC3P53804 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC25.73■■□□□ 1.71
TTC3P53804 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC25.73■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms